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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244273 (80 seq.)
>W1710863636
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
390597
390672
+
Thr
CGT
[ENA]
¡û
>W1711147384
LVJP01003595
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
4655
4580
-
Thr
CGT
[ENA]
¡û
>W1711147445
LVJQ01002062
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
1240
1165
-
Thr
CGT
[ENA]
¡û
>W1711147528
LVJS01000034
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
22274
22199
-
Thr
CGT
[ENA]
¡û
>W1711147685
LVJV01001334
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
532
457
-
Thr
CGT
[ENA]
¡û
>C171007694
CP011160
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 1559 [CP011160]
3482424
3482349
-
Thr
CGT
-
¡û
>C171007718
CP011163
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 1609 [CP011163]
2387856
2387931
+
Thr
CGT
-
¡û
>C171015321
CP012002
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii 1566 [CP012002]
2854726
2854801
+
Thr
CGT
-
¡û
>W131218940
ATYD01000021
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
17531
17606
+
Thr
CGT
[ENA]
¡û
>W131219044
ATYF01000012
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
151254
151329
+
Thr
CGT
[ENA]
¡û
>W131231931
AUIV01000022
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
45074
45149
+
Thr
CGT
[ENA]
¡û
>WENV180292086
OBIV01305180
[OBIV] soil metagenome; Clay
220
295
+
Thr
CGT
[ENA]
¢þ
>WENV180693836
OCZS011653401
[OCZS] soil metagenome; soil
139
64
-
Thr
CGT
[ENA]
¢þ
>W141151893
AXBJ01000007
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
157981
157906
-
Thr
CGT
[ENA]
¡û
>WENV170552235
CXWJ01048276
[CXWJ] wastewater metagenome; activated sludge
784
859
+
Thr
CGT
[ENA]
¢þ
>C181048416
CP020992
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP4885 [CP020992]
784613
784688
+
Thr
CGT
-
¡û
>C181048517
CP020998
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6165 [CP020998]
15096
15021
-
Thr
CGT
-
¡û
>C181048554
CP021001
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6166 [CP021001]
2882370
2882295
-
Thr
CGT
-
¡û
>C181048615
CP021006
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6975 [CP021006]
1018358
1018283
-
Thr
CGT
-
¡û
>C181048742
CP021012
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP7767 [CP021012]
3935225
3935150
-
Thr
CGT
-
¡û
>C181048831
CP021018
Gammaproteobacteria
Xanthomonas citri pv. phaseoli var. fuscans CFBP6167 [CP021018]
3067178
3067253
+
Thr
CGT
-
¡û
>C181061186
CP022267
Gammaproteobacteria
Xanthomonas citri pv. vignicola CFBP7112 [CP022267]
1480180
1480255
+
Thr
CGT
-
¡û
>C181185971
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
1487976
1488051
+
Thr
CGT
-
¡û
>C191008725
CP011250
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 1561 [CP011250]
1304205
1304280
+
Thr
CGT
-
¡û
>C191008995
CP012051
Gammaproteobacteria
Xanthomonas citri pv. fuscans ISO118C5 [CP012051]
1443922
1443997
+
Thr
CGT
-
¡û
>C191009048
CP012053
Gammaproteobacteria
Xanthomonas citri pv. fuscans ISO118C1 [CP012053]
1443942
1444017
+
Thr
CGT
-
¡û
>C191009101
CP012055
Gammaproteobacteria
Xanthomonas citri pv. fuscans ISO12C3 [CP012055]
1443922
1443997
+
Thr
CGT
-
¡û
>C191183295
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
2849561
2849636
+
Thr
CGT
-
¡û
>C191189085
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
2560570
2560495
-
Thr
CGT
-
¡û
>W141803987
JPHG01000002
Gammaproteobacteria
Xanthomonas citri subsp. fuscans [JPHG]
63149
63074
-
Thr
CGT
[ENA]
¡û
>C141012207
FO681494
Gammaproteobacteria
Xanthomonas citri pv. fuscans 4834-R [FO681494]
3780381
3780306
-
Thr
CGT
[Ensembl]
¡û
>W1910597641
LAUH01000180
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 535 [LAUH]
1981
1906
-
Thr
CGT
[ENA]
¡û
>W1910597683
LAUI01000204
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 763 [LAUI]
13822
13897
+
Thr
CGT
[ENA]
¡û
>W1910597740
LAUJ01000150
Gammaproteobacteria
Xanthomonas citri pv. aurantifolii FDC 867 [LAUJ]
1679
1604
-
Thr
CGT
[ENA]
¡û
>W1911498727
OCYR01000099
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP6166 [OCYR]
63141
63066
-
Thr
CGT
[ENA]
¡û
>W1911498915
OCYV01000045
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP7767 [OCYV]
55336
55411
+
Thr
CGT
[ENA]
¡û
>W1911498981
OCYW01000095
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP6960 [OCYW]
55336
55411
+
Thr
CGT
[ENA]
¡û
>W1911499024
OCYX01000092
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP6970 [OCYX]
1218
1143
-
Thr
CGT
[ENA]
¡û
>W1911499045
OCYY01000017
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP7766 [OCYY]
63141
63066
-
Thr
CGT
[ENA]
¡û
>W1911499352
OCZG01000104
Gammaproteobacteria
Xanthomonas citri subsp. fuscans CFBP1815 [OCZG]
55335
55410
+
Thr
CGT
[ENA]
¡û
>W1810084444
PESG01000008
Gammaproteobacteria
Xanthomonas citri pv. anacardii TAQ18 [PESG]
65458
65383
-
Thr
CGT
[ENA]
¡û
>W1810084496
PESH01000007
Gammaproteobacteria
Xanthomonas citri pv. anacardii TAQ13 [PESH]
65458
65383
-
Thr
CGT
[ENA]
¡û
>W1810084562
PESI01000010
Gammaproteobacteria
Xanthomonas citri pv. anacardii IBSBF2579 [PESI]
45393
45318
-
Thr
CGT
[ENA]
¡û
>W1810514374
QBUW01000007
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
295389
295464
+
Thr
CGT
[ENA]
¡û
>W1810597211
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
199309
199234
-
Thr
CGT
[ENA]
¡û
>W1810692813
QLKV01000014
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
14753
14828
+
Thr
CGT
[ENA]
¡û
>ENV09004074
ADIG01004045
Groundwater metagenome 4000601.lucy.pga.C1
123
48
-
Thr
CGT
[ENA]
¡û
>W10103040
ACPX01000209
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 11122 [ACPX]
92687
92612
-
Thr
CGT
[ENA]
¡û
>W10103095
ACPY01000231
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 10535 [ACPY]
51809
51884
+
Thr
CGT
[ENA]
¡û
>W11103196
ACPX01000209
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 11122 [ACPX]
92687
92612
-
Thr
CGT
[ENA]
¡û
>W11103251
ACPY01000231
Gammaproteobacteria
Xanthomonas citri subsp. aurantifolii str. ICPB 10535 [ACPY]
51809
51884
+
Thr
CGT
[ENA]
¡û
>W1511305136
JPLC01000024
Gammaproteobacteria
Thermomonas brevis DSM 15422 [JPLC]
82798
82723
-
Thr
CGT
[ENA]
¡û
>W1511355497
JRRE02000078
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 670 [JRRE]
1323
1248
-
Thr
CGT
[ENA]
¡û
>W1511361663
JSBQ02000077
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 2665 [JSBQ]
63811
63736
-
Thr
CGT
[ENA]
¡û
>W1511361709
JSBR02000045
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1654 [JSBR]
63198
63123
-
Thr
CGT
[ENA]
¡û
>W1511361797
JSBS02000114
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1158 [JSBS]
63196
63121
-
Thr
CGT
[ENA]
¡û
>W1511361839
JSBT02000089
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1433 [JSBT]
63897
63822
-
Thr
CGT
[ENA]
¡û
>W1511366026
JSEU02000060
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1495 [JSEU]
1576
1501
-
Thr
CGT
[ENA]
¡û
>W1511366097
JSEV02000103
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1056 [JSEV]
2017
1942
-
Thr
CGT
[ENA]
¡û
>W1511366100
JSEW02000030
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1402 [JSEW]
2017
1942
-
Thr
CGT
[ENA]
¡û
>W1511366199
JSEX02000160
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 3660 [JSEX]
12121
12046
-
Thr
CGT
[ENA]
¡û
>W1511366231
JSEY02000055
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 1058 [JSEY]
12259
12184
-
Thr
CGT
[ENA]
¡û
>W1511402940
JTKK02000073
Gammaproteobacteria
Xanthomonas citri subsp. fuscans NCPPB 381 [JTKK]
2150
2075
-
Thr
CGT
[ENA]
¡û
>W1511503622
JXHS03000107
Gammaproteobacteria
Xanthomonas citri subsp. fuscans X621 [JXHS]
48915
48990
+
Thr
CGT
[ENA]
¡û
>W1511506115
JXLW02000042
Gammaproteobacteria
Xanthomonas citri subsp. fuscans XCP631 [JXLW]
103470
103545
+
Thr
CGT
[ENA]
¡û
>W11180876
AGIL01000003
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
160097
160022
-
Thr
CGT
[ENA]
¡û
>W1610027308
AVPT01000012
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
75635
75710
+
Thr
CGT
[ENA]
¡û
>W121071335
AJXV01000018
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
125221
125146
-
Thr
CGT
[ENA]
¡û
>W121071385
AJXW01000027
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
8117
8042
-
Thr
CGT
[ENA]
¡û
>C131003741
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
1353561
1353486
-
Thr
CGT
-
¡û
>W1610527463
JPYF01000619
Gammaproteobacteria
Xanthomonas citri subsp. fuscans [JPYF]
851
926
+
Thr
CGT
[ENA]
¡û
>W1610725982
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
390597
390672
+
Thr
CGT
[ENA]
¡û
>W1610958337
LVJP01003595
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
4655
4580
-
Thr
CGT
[ENA]
¡û
>W1610958398
LVJQ01002062
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
1240
1165
-
Thr
CGT
[ENA]
¡û
>W1610958481
LVJS01000034
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
22274
22199
-
Thr
CGT
[ENA]
¡û
>W1610958638
LVJV01001334
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
532
457
-
Thr
CGT
[ENA]
¡û
>W1710023542
AVPT01000012
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
75635
75710
+
Thr
CGT
[ENA]
¡û
>W1710582964
FQUK01000004
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
53977
54052
+
Thr
CGT
[ENA]
¡û
>W1710601710
FUXP01000001
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
627619
627544
-
Thr
CGT
[ENA]
¡û
>W1710628966
JPYF01000619
Gammaproteobacteria
Xanthomonas citri subsp. fuscans [JPYF]
851
926
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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