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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24435 (43 seq.)
>W1710810399
LKGZ01000034
Gammaproteobacteria
Pseudomonas putida [LKGZ]
550093
550182
+
Ser
CGA
[ENA]
¡û
>W1710815537
LKKJ01000035
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
54414
54503
+
Ser
CGA
[ENA]
¡û
>W1710815645
LKKL01000024
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
81442
81353
-
Ser
CGA
[ENA]
¡û
>W131052599
AMZB01000137
Gammaproteobacteria
Pseudomonas nitroreducens TX1 [AMZB]
150414
150325
-
Ser
CGA
[ENA]
¡û
>W1711353384
MDEM01000032
Gammaproteobacteria
Stutzerimonas xanthomarina [MDEM]
564591
564680
+
Ser
CGA
[ENA]
¡û
>W1711509496
MKZO01000067
Gammaproteobacteria
Pseudomonas putida GM4FR [MKZO]
100185
100096
-
Ser
CGA
[ENA]
¡û
>W1712049372
NFSA01000057
Gammaproteobacteria
Pseudomonas sp. 1239 [NFSA]
79723
79812
+
Ser
CGA
[ENA]
¡û
>W1712108172
NJBA01000002
Gammaproteobacteria
Pseudomonas nitroreducens [NJBA]
96559
96648
+
Ser
CGA
[ENA]
¡û
>W141273279
CCSF01000001
Gammaproteobacteria
Pseudomonas saudiphocaensis 20_BN [CCSF]
1002351
1002262
-
Ser
CGA
[ENA]
¡û
>WENV170263289
CERC01031620
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1376
1287
-
Ser
CGA
[ENA]
¢þ
>WENV170265298
CERD01126772
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3339
3250
-
Ser
CGA
[ENA]
¢þ
>WENV170347174
CETG01109437
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
153
242
+
Ser
CGA
[ENA]
¢þ
>WENV170356677
CETJ01057657
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
52281
52192
-
Ser
CGA
[ENA]
¢þ
>WENV170779575
LZQQ01000021
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
25495
25406
-
Ser
CGA
[ENA]
¢þ
>C181100491
CP024478
Gammaproteobacteria
Pseudomonas sp. HLS-6 [CP024478]
1410029
1410118
+
Ser
CGA
-
¡û
>C191044703
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
1581325
1581414
+
Ser
CGA
-
¡û
>W1910751464
MJMK01000045
Gammaproteobacteria
Pseudomonas sp. 7SR1 [MJMK]
57520
57431
-
Ser
CGA
[ENA]
¡û
>W1910766180
MOAM01000016
Gammaproteobacteria
Pseudomonas vranovensis 15D11 [MOAM]
333400
333489
+
Ser
CGA
[ENA]
¡û
>W1911391539
NWCB01000011
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [NWCB]
156375
156464
+
Ser
CGA
[ENA]
¡û
>W1911565420
PCOA01000015
Gammaproteobacteria
Pseudomonas sp. MYb187 [PCOA]
154678
154589
-
Ser
CGA
[ENA]
¡û
>W1911587051
PJQQ01000029
Gammaproteobacteria
Pseudomonas sp. FFUP_PS_473 [PJQQ]
40502
40413
-
Ser
CGA
[ENA]
¡û
>W1911680905
QJRG01000034
Gammaproteobacteria
Pseudomonas alkylphenolica xwS2 [QJRG]
227637
227548
-
Ser
CGA
[ENA]
¡û
>W1810073309
PEFV01000001
Gammaproteobacteria
Pseudomonas sp. BRM28 [PEFV]
1805593
1805682
+
Ser
CGA
[ENA]
¡û
>W1810156408
PJBG01000067
Gammaproteobacteria
Pseudomonas sp. Choline-3u-10 [PJBG]
4231
4142
-
Ser
CGA
[ENA]
¡û
>W1810176574
PJQC01000187
Gammaproteobacteria
Pseudomonas sp. S06B 330 [PJQC]
3286
3197
-
Ser
CGA
[ENA]
¡û
>W1810224443
POUL01000001
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
342608
342519
-
Ser
CGA
[ENA]
¡û
>W1810368286
PVZN01000020
Gammaproteobacteria
Pseudomonas sp. BBP2017 [PVZN]
62393
62482
+
Ser
CGA
[ENA]
¡û
>W1810722092
QNTV01000002
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
118898
118809
-
Ser
CGA
[ENA]
¡û
>W1511489999
JWTL01000004
Gammaproteobacteria
Pseudomonas sp. 10B238 [JWTL]
133569
133480
-
Ser
CGA
[ENA]
¡û
>W1511534496
JYOA01000004
Gammaproteobacteria
Pseudomonas sp. 21 [JYOA]
86187
86098
-
Ser
CGA
[ENA]
¡û
>W1511534759
JYOF01000001
Gammaproteobacteria
Pseudomonas sp. 2(2015) 2[2015] [JYOF]
127399
127310
-
Ser
CGA
[ENA]
¡û
>C121015341
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
1587083
1587172
+
Ser
CGA
[Ensembl]
¡û
>C161000958
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
3522389
3522300
-
Ser
CGA
-
¡û
>C161089987
CP015641
Gammaproteobacteria
Stutzerimonas stutzeri 273 [CP015641]
3522932
3523021
+
Ser
CGA
[Ensembl]
¡û
>W121018246
AGSX01000188
Gammaproteobacteria
Stutzerimonas stutzeri SDM-LAC [AGSX]
1022
1111
+
Ser
CGA
[ENA]
¡û
>W121062721
AJJP01000090
Gammaproteobacteria
Pseudomonas donghuensis HYS [AJJP]
36810
36721
-
Ser
CGA
[ENA]
¡û
>W1610059147
BCAT01000003
Gammaproteobacteria
Pseudomonas sp. NBRC 111117 [BCAT]
89993
89904
-
Ser
CGA
[ENA]
¡û
>W1610674454
LKGZ01000034
Gammaproteobacteria
Pseudomonas putida [LKGZ]
550093
550182
+
Ser
CGA
[ENA]
¡û
>W1610679634
LKKJ01000035
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
54414
54503
+
Ser
CGA
[ENA]
¡û
>W1610679742
LKKL01000024
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
81442
81353
-
Ser
CGA
[ENA]
¡û
>W1710056094
BCAT01000003
Gammaproteobacteria
Pseudomonas sp. NBRC 111117 [BCAT]
89993
89904
-
Ser
CGA
[ENA]
¡û
>W1710581427
FPKC01000017
Gammaproteobacteria
Pseudomonas sp. NFACC47-1 [FPKC]
75018
75107
+
Ser
CGA
[ENA]
¡û
>W1710586229
FQXA01000003
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
258719
258630
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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