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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244362 (69 seq.)
>W1710777296
LJBJ02000016
Actinomycetota
Rothia kristinae [LJBJ]
31543
31470
-
Glu
CTC
[ENA]
¡û
>W1710874699
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
809885
809810
-
Glu
CTC
[ENA]
¡û
>W1710996375
LQBJ01000011
Actinomycetota
Kocuria palustris [LQBJ]
158969
158896
-
Glu
CTC
[ENA]
¡û
>W1710996376
LQBJ01000011
Actinomycetota
Kocuria palustris [LQBJ]
158772
158699
-
Glu
CTC
[ENA]
¡û
>W1711178734
LWGZ01000878
Actinomycetota
Rothia kristinae [LWGZ]
248
175
-
Glu
CTC
[ENA]
¡û
>W1711589207
MODZ01000007
Actinomycetota
Rothia kristinae [MODZ]
142685
142612
-
Glu
CTC
[ENA]
¡û
>WENV180016055
FSTY01000416
[FSTY] metagenome; soil
10726
10799
+
Glu
CTC
[ENA]
¢þ
>WENV180016070
FSTY01000686
[FSTY] metagenome; soil
2639
2564
-
Glu
CTC
[ENA]
¢þ
>WENV180017263
FSWR01000028
[FSWR] metagenome; soil
7508
7435
-
Glu
CTC
[ENA]
¢þ
>WENV180017294
FSWR01000065
[FSWR] metagenome; soil
7353
7426
+
Glu
CTC
[ENA]
¢þ
>WENV180017649
FSXL01000255
[FSXL] metagenome; soil
8976
9049
+
Glu
CTC
[ENA]
¢þ
>WENV180017823
FSXQ01003668
[FSXQ] metagenome; soil
71227
71300
+
Glu
CTC
[ENA]
¢þ
>WENV180023601
FTIC01119372
[FTIC] metagenome; soil
193
118
-
Glu
CTC
[ENA]
¢þ
>WENV180023820
FTIF01000925
[FTIF] metagenome; soil
28308
28381
+
Glu
CTC
[ENA]
¢þ
>WENV180026456
FTIT01303690
[FTIT] metagenome; soil
147
74
-
Glu
CTC
[ENA]
¢þ
>WENV180029120
FTJI01054602
[FTJI] metagenome; soil
2
75
+
Glu
CTC
[ENA]
¢þ
>WENV180033492
FTKK01081780
[FTKK] metagenome; soil
3162
3087
-
Glu
CTC
[ENA]
¢þ
>WENV180034641
FTKR01054942
[FTKR] metagenome; soil
2
75
+
Glu
CTC
[ENA]
¢þ
>WENV180474884
OBYT01000122
[OBYT] human gut metagenome; faeces
175
248
+
Glu
CTC
[ENA]
¢þ
>W141279369
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
2418281
2418208
-
Glu
CTC
[ENA]
¡û
>W141279370
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
2418084
2418011
-
Glu
CTC
[ENA]
¡û
>WENV183511387
OMJG01000157
[OMJG] food metagenome; Cotija cheese
25645
25572
-
Glu
CTC
[ENA]
¢þ
>WENV170561758
CZCA01026798
[CZCA] anaerobic digester metagenome; anaerobic digester
172
97
-
Glu
CTC
[ENA]
¢þ
>C181143987
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1909239
1909166
-
Glu
CTC
-
¡û
>C191011723
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
1999797
1999724
-
Glu
CTC
-
¡û
>W141531773
JHEL01000015
Actinomycetota
Curtobacterium sp. S6 [JHEL]
639822
639749
-
Glu
CTC
[ENA]
¡û
>W1910334114
FSNK01000216
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
2455
2382
-
Glu
CTC
[ENA]
¡û
>W1910431591
FVUK01000006
Actinomycetota
Mycobacteroides abscessus subsp. bolletii 137 [FVUK]
186379
186452
+
Glu
CTC
[ENA]
¡û
>W1910431592
FVUK01000006
Actinomycetota
Mycobacteroides abscessus subsp. bolletii 137 [FVUK]
186642
186715
+
Glu
CTC
[ENA]
¡û
>W1910442286
FWFC01000005
Actinomycetota
Kocuria massiliensis Marseille-P3598 [FWFC]
205745
205818
+
Glu
CTC
[ENA]
¡û
>W1911114541
NOIQ01000001
Actinomycetota
Rothia koreensis JCM 15915 [NOIQ]
463607
463680
+
Glu
CTC
[ENA]
¡û
>W1911114603
NOIR01000002
Actinomycetota
Kocuria sp. 257 [NOIR]
530135
530062
-
Glu
CTC
[ENA]
¡û
>W1911114632
NOIS01000001
Actinomycetota
Kocuria sp. 36 [NOIS]
729271
729344
+
Glu
CTC
[ENA]
¡û
>W1911114741
NOIU01000002
Actinomycetota
Rothia halotolerans JCM 31975 [NOIU]
862799
862726
-
Glu
CTC
[ENA]
¡û
>W1911114762
NOIV01000001
Actinomycetota
Rothia kristinae ATCC 27570 [NOIV]
337453
337526
+
Glu
CTC
[ENA]
¡û
>W1911200080
NREL01000007
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A324 [NREL]
31264
31191
-
Glu
CTC
[ENA]
¡û
>W1911200104
NREM01000001
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A229 [NREM]
200837
200764
-
Glu
CTC
[ENA]
¡û
>W1911709346
QPKL01000007
Actinomycetota
Kocuria sp. CPCC 104605 [QPKL]
39777
39850
+
Glu
CTC
[ENA]
¡û
>W1911709347
QPKL01000007
Actinomycetota
Kocuria sp. CPCC 104605 [QPKL]
39946
40021
+
Glu
CTC
[ENA]
¡û
>W1810169250
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
909649
909576
-
Glu
CTC
[ENA]
¡û
>SRA1003421
SRR002326.456707
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
147
220
+
Glu
CTC
[SRA]
>SRA1003677
SRR002327.115614
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
55
128
+
Glu
CTC
[SRA]
>W1810364705
PVTL01000003
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
379239
379312
+
Glu
CTC
[ENA]
¡û
>W1810568854
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
894794
894721
-
Glu
CTC
[ENA]
¡û
>C151095244
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
999923
999996
+
Glu
CTC
-
¡û
>C151095245
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
1000120
1000193
+
Glu
CTC
-
¡û
>W1511459339
JVKI01000002
Actinomycetota
Leifsonia xyli 356_LXYL [JVKI]
14647
14720
+
Glu
CTC
[ENA]
¡û
>C161073140
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
3279938
3279863
-
Glu
CTC
[Ensembl]
¡û
>W1610069432
BCSM01000001
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
69328
69255
-
Glu
CTC
[ENA]
¡û
>W1610112201
CZJR01000058
Actinomycetota
Kocuria palustris [CZJR]
90567
90494
-
Glu
CTC
[ENA]
¡û
>W1610112202
CZJR01000058
Actinomycetota
Kocuria palustris [CZJR]
90370
90297
-
Glu
CTC
[ENA]
¡û
>W1610590100
LDRD01000084
Actinomycetota
Rothia kristinae [LDRD]
12654
12581
-
Glu
CTC
[ENA]
¡û
>W1610590137
LDRE01000079
Actinomycetota
Rothia kristinae [LDRE]
12679
12606
-
Glu
CTC
[ENA]
¡û
>W1610590200
LDRG01000016
Actinomycetota
Rothia kristinae [LDRG]
3626
3699
+
Glu
CTC
[ENA]
¡û
>W1610590294
LDRI01000041
Actinomycetota
Rothia kristinae [LDRI]
12654
12581
-
Glu
CTC
[ENA]
¡û
>W1610590347
LDRJ01000077
Actinomycetota
Rothia kristinae [LDRJ]
340
413
+
Glu
CTC
[ENA]
¡û
>W1610641482
LJBJ02000016
Actinomycetota
Rothia kristinae [LJBJ]
31543
31470
-
Glu
CTC
[ENA]
¡û
>W1610737045
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
809885
809810
-
Glu
CTC
[ENA]
¡û
>W1610851032
LQBJ01000011
Actinomycetota
Kocuria palustris [LQBJ]
158969
158896
-
Glu
CTC
[ENA]
¡û
>W1610851033
LQBJ01000011
Actinomycetota
Kocuria palustris [LQBJ]
158772
158699
-
Glu
CTC
[ENA]
¡û
>W1610986781
LWGZ01000878
Actinomycetota
Rothia kristinae [LWGZ]
248
175
-
Glu
CTC
[ENA]
¡û
>W1710066805
BCSM01000001
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
69328
69255
-
Glu
CTC
[ENA]
¡û
>W1710114905
CZJR01000058
Actinomycetota
Kocuria palustris [CZJR]
90567
90494
-
Glu
CTC
[ENA]
¡û
>W1710114906
CZJR01000058
Actinomycetota
Kocuria palustris [CZJR]
90370
90297
-
Glu
CTC
[ENA]
¡û
>W1710709380
LDRD01000084
Actinomycetota
Rothia kristinae [LDRD]
12654
12581
-
Glu
CTC
[ENA]
¡û
>W1710709417
LDRE01000079
Actinomycetota
Rothia kristinae [LDRE]
12679
12606
-
Glu
CTC
[ENA]
¡û
>W1710709480
LDRG01000016
Actinomycetota
Rothia kristinae [LDRG]
3626
3699
+
Glu
CTC
[ENA]
¡û
>W1710709574
LDRI01000041
Actinomycetota
Rothia kristinae [LDRI]
12654
12581
-
Glu
CTC
[ENA]
¡û
>W1710709627
LDRJ01000077
Actinomycetota
Rothia kristinae [LDRJ]
340
413
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK