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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24467 (6 seq.)
>WENV181254211
OFFR01001408
[OFFR] mouse gut metagenome; faeces
7111
7021
-
Ser
GGA
[ENA]
¡û
>WENV181256692
OFFT01018932
[OFFT] mouse gut metagenome; faeces
481
391
-
Ser
GGA
[ENA]
¡û
>WENV181257765
OFFU01004973
[OFFU] mouse gut metagenome; faeces
1724
1634
-
Ser
GGA
[ENA]
¡û
>WENV181267360
OFGC01003989
[OFGC] mouse gut metagenome; faeces
2973
2883
-
Ser
GGA
[ENA]
¡û
>WENV181271246
OFGF01013208
[OFGF] mouse gut metagenome; faeces
1774
1864
+
Ser
GGA
[ENA]
¡û
>WENV181299692
OFHM01027623
[OFHM] mouse gut metagenome; faeces
712
802
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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