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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24467 (20 seq.)
>W1710892752
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
147428
147339
-
Ser
TGA
[ENA]
¡û
>W1711124470
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1540109
1540198
+
Ser
TGA
[ENA]
¡û
>W1711124505
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1448353
1448442
+
Ser
TGA
[ENA]
¡û
>W1711124560
LUKF01000019
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
304373
304284
-
Ser
TGA
[ENA]
¡û
>W1712010634
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
2402943
2403032
+
Ser
TGA
[ENA]
¡û
>C001958
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
73069
73158
+
Ser
TGA
[Ensembl]
¡û
>WENV170708859
LNFM01000008
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
275561
275650
+
Ser
TGA
[ENA]
¢þ
>WENV170712715
LNFM01016937
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5367
5278
-
Ser
TGA
[ENA]
¢þ
>WENV170996606
MWWF01341701
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
83
172
+
Ser
TGA
[ENA]
¢þ
>C181047778
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
3723972
3723883
-
Ser
TGA
-
¡û
>W1910698900
MEPV01000020
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
43374
43285
-
Ser
TGA
[ENA]
¡û
>C151003348
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
66727
66816
+
Ser
TGA
[Ensembl]
¡û
>C151031129
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
2570444
2570533
+
Ser
TGA
[Ensembl]
¡û
>C151087472
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
73070
73159
+
Ser
TGA
-
¡û
>W1511399664
JTEV01000015
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
122946
122857
-
Ser
TGA
[ENA]
¡û
>C131001646
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
73051
73140
+
Ser
TGA
[Ensembl]
¡û
>W1610753018
LNEB01000015
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
147428
147339
-
Ser
TGA
[ENA]
¡û
>W1610935410
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
1540109
1540198
+
Ser
TGA
[ENA]
¡û
>W1610935445
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
1448353
1448442
+
Ser
TGA
[ENA]
¡û
>W1610935500
LUKF01000019
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
304373
304284
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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