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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244795 (34 seq.)
>C025658
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1736473
1736550
+
Asp
GTC
-
¡û
>C025779
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1075434
1075511
+
Asp
GTC
[Ensembl]
¡û
>W141082682
AUNF01000114
Thermotogota
Thermotoga sp. A7A [AUNF]
25361
25438
+
Asp
GTC
[ENA]
¡û
>WENV181408540
OGCH01004897
[OGCH] hot springs metagenome; hot springs
468
391
-
Asp
GTC
[ENA]
¢þ
>C08010908
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1110162
1110088
-
Asp
GTC
[Ensembl]
¡û
>WENV170676153
LDZR01001250
[LDZR] terrestrial metagenome; oil reservoir sample K2
26695
26772
+
Asp
GTC
[ENA]
¢þ
>WENV170676780
LDZS01002335
[LDZS] terrestrial metagenome; oil reservoir sample K3
259
182
-
Asp
GTC
[ENA]
¢þ
>W09106551
AAWB01000005
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
17248
17171
-
Asp
GTC
[ENA]
¡û
>W09107420
ABIJ01000004
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
26200
26123
-
Asp
GTC
[ENA]
¡û
>W09112247
ABXR01000031
Thermotogota
Marinitoga piezophila KA3 [ABXR]
40464
40541
+
Asp
GTC
[ENA]
¡û
>C141011539
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1078778
1078701
-
Asp
GTC
-
¡û
>C151004284
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1109878
1109801
-
Asp
GTC
[Ensembl]
¡û
>C151004330
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1064633
1064556
-
Asp
GTC
[Ensembl]
¡û
>C151074618
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1726460
1726537
+
Asp
GTC
[Ensembl]
¡û
>C151076972
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1736488
1736565
+
Asp
GTC
[Ensembl]
¡û
>C151077018
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1736488
1736565
+
Asp
GTC
[Ensembl]
¡û
>W10105847
ACXW01000007
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
55392
55315
-
Asp
GTC
[ENA]
¡û
>C10113510
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1094251
1094174
-
Asp
GTC
[Ensembl]
¡û
>W11108167
ACXW01000007
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
55392
55315
-
Asp
GTC
[ENA]
¡û
>W11180802
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
383987
384064
+
Asp
GTC
[ENA]
¡û
>W121062189
AJII01000010
Thermotogota
Thermotoga sp. EMP [AJII]
7376
7299
-
Asp
GTC
[ENA]
¡û
>C131012508
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1736490
1736567
+
Asp
GTC
-
¡û
>W1610540318
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
30044
29967
-
Asp
GTC
[ENA]
¡û
>W1610540378
JSFH01000007
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93493
93416
-
Asp
GTC
[ENA]
¡û
>W1610540410
JSFI01000003
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
30039
29962
-
Asp
GTC
[ENA]
¡û
>W1610540457
JSFJ01000002
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
75985
76062
+
Asp
GTC
[ENA]
¡û
>W1610612899
LGFG01000002
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
26695
26772
+
Asp
GTC
[ENA]
¡û
>W1610613170
LGFM01000204
Thermotogota
Thermotoga sp. 47_83 [LGFM]
259
182
-
Asp
GTC
[ENA]
¡û
>W1710643339
JSFG01000003
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
30044
29967
-
Asp
GTC
[ENA]
¡û
>W1710643399
JSFH01000007
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93493
93416
-
Asp
GTC
[ENA]
¡û
>W1710643431
JSFI01000003
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
30039
29962
-
Asp
GTC
[ENA]
¡û
>W1710643478
JSFJ01000002
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
75985
76062
+
Asp
GTC
[ENA]
¡û
>W1710734181
LGFG01000002
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
26695
26772
+
Asp
GTC
[ENA]
¡û
>W1710734377
LGFM01000204
Thermotogota
Thermotoga sp. 47_83 [LGFM]
259
182
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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