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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24556 (86 seq.)
>W1710926763
LOEL01000045
Bacteroidota
Porphyromonas gingivalis [LOEL]
19058
19145
+
Ser
GCT
[ENA]
¡û
>W131111450
APMB01000219
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
16227
16140
-
Ser
GCT
[ENA]
¡û
>W131175803
ARJN01000054
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
11426
11513
+
Ser
GCT
[ENA]
¡û
>W1712084865
NHRU01000004
Bacteroidota
Porphyromonas gingivalis [NHRU]
31992
32079
+
Ser
GCT
[ENA]
¡û
>C016394
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
563323
563237
-
Ser
GCT
[Ensembl]
¡û
>WENV180003942
FLRP01046370
[FLRP] metagenome; saliva
132
45
-
Ser
GCT
[ENA]
¢þ
>WENV180004000
FLRQ01003815
[FLRQ] metagenome; saliva
464
377
-
Ser
GCT
[ENA]
¢þ
>WENV180007643
FLSA01139910
[FLSA] metagenome; saliva
172
259
+
Ser
GCT
[ENA]
¢þ
>WENV180010559
FLSD01010907
[FLSD] metagenome; saliva
47
134
+
Ser
GCT
[ENA]
¢þ
>WENV180010967
FLSI01040982
[FLSI] metagenome; saliva
326
239
-
Ser
GCT
[ENA]
¢þ
>WENV180731429
ODGW01000481
[ODGW] human metagenome; G_DNA_Supragingival plaque
12377
12290
-
Ser
GCT
[ENA]
¢þ
>W141074444
ASYL01000097
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
57694
57781
+
Ser
GCT
[ENA]
¡û
>W141145621
AWUU01000026
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
6277
6364
+
Ser
GCT
[ENA]
¡û
>W141145692
AWUV01000141
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
18943
19030
+
Ser
GCT
[ENA]
¡û
>W141145725
AWUW01000110
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
15472
15385
-
Ser
GCT
[ENA]
¡û
>W141145944
AWVC01000045
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
5395
5482
+
Ser
GCT
[ENA]
¡û
>W141145998
AWVD01000094
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
16183
16096
-
Ser
GCT
[ENA]
¡û
>W141146031
AWVE01000048
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
22892
22805
-
Ser
GCT
[ENA]
¡û
>WENV182005015
OHBE01001437
[OHBE] human gut metagenome; faeces
5460
5547
+
Ser
GCT
[ENA]
¢þ
>C08007285
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1625476
1625563
+
Ser
GCT
[Ensembl]
¡û
>WENV183507911
OMGZ01000409
[OMGZ] human oral metagenome; human oral
334
421
+
Ser
GCT
[ENA]
¢þ
>WENV183510888
OMHT01000025
[OMHT] human oral metagenome; human oral
1166
1079
-
Ser
GCT
[ENA]
¢þ
>C181102093
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
2004845
2004758
-
Ser
GCT
-
¡û
>C181102157
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
640156
640069
-
Ser
GCT
-
¡û
>C181102166
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
545327
545414
+
Ser
GCT
-
¡û
>C181102228
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1943049
1943136
+
Ser
GCT
-
¡û
>C181102304
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
473696
473609
-
Ser
GCT
-
¡û
>C181102311
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
383299
383386
+
Ser
GCT
-
¡û
>C181102358
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
240036
240123
+
Ser
GCT
-
¡û
>C181102442
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1668888
1668801
-
Ser
GCT
-
¡û
>C181102493
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
1785091
1785004
-
Ser
GCT
-
¡û
>C181102545
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
898470
898383
-
Ser
GCT
-
¡û
>C181102560
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
957401
957488
+
Ser
GCT
-
¡û
>C181123589
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1651373
1651460
+
Ser
GCT
-
¡û
>C181123719
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
563323
563236
-
Ser
GCT
-
¡û
>W1910371025
FUFB01000032
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
24676
24589
-
Ser
GCT
[ENA]
¡û
>W1910371080
FUFC01000048
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
53020
53107
+
Ser
GCT
[ENA]
¡û
>W1910371118
FUFD01000049
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
27622
27535
-
Ser
GCT
[ENA]
¡û
>W1910371141
FUFE01000023
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
5535
5622
+
Ser
GCT
[ENA]
¡û
>W1910371187
FUFF01000008
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
301699
301612
-
Ser
GCT
[ENA]
¡û
>W1910371233
FUFG01000021
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
89652
89565
-
Ser
GCT
[ENA]
¡û
>W1910371284
FUFH01000042
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
151085
150998
-
Ser
GCT
[ENA]
¡û
>W1910371314
FUFI01000009
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
25752
25665
-
Ser
GCT
[ENA]
¡û
>W1910371367
FUFJ01000044
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
57672
57585
-
Ser
GCT
[ENA]
¡û
>W1910372561
FUGF01000022
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
88833
88746
-
Ser
GCT
[ENA]
¡û
>W1910372621
FUGG01000046
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
56770
56683
-
Ser
GCT
[ENA]
¡û
>C09102776
AP010656
Bacteroidota
Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 CfPt1-2 [AP010656]
193232
193319
+
Ser
GCT
[Ensembl]
¡û
>W1911247377
NSLL01000012
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
56000
56087
+
Ser
GCT
[ENA]
¡û
>W1911247427
NSLM01000014
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
16480
16393
-
Ser
GCT
[ENA]
¡û
>W1911247444
NSLN01000004
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
3217
3304
+
Ser
GCT
[ENA]
¡û
>W1911247492
NSLO01000004
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
19740
19827
+
Ser
GCT
[ENA]
¡û
>W1911247559
NSLP01000037
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
16541
16454
-
Ser
GCT
[ENA]
¡û
>W1911247595
NSLQ01000020
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
22535
22622
+
Ser
GCT
[ENA]
¡û
>W1911247618
NSLR01000002
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
25684
25597
-
Ser
GCT
[ENA]
¡û
>W1911247663
NSLS01000001
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
266981
266894
-
Ser
GCT
[ENA]
¡û
>W1911247717
NSLT01000012
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
31907
31994
+
Ser
GCT
[ENA]
¡û
>W1911247752
NSLU01000020
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
27452
27539
+
Ser
GCT
[ENA]
¡û
>W1911247796
NSLV01000005
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
27653
27566
-
Ser
GCT
[ENA]
¡û
>W1911247860
NSLW01000011
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
5302
5389
+
Ser
GCT
[ENA]
¡û
>W1911247887
NSLX01000008
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
46893
46980
+
Ser
GCT
[ENA]
¡û
>W1911709115
QPGS01000009
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
5451
5538
+
Ser
GCT
[ENA]
¡û
>C151089039
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1600849
1600936
+
Ser
GCT
-
¡û
>C151089087
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1533385
1533472
+
Ser
GCT
-
¡û
>W1511328379
JQJE01000042
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
11252
11339
+
Ser
GCT
[ENA]
¡û
>W1511336127
JQZY01000014
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
12167
12254
+
Ser
GCT
[ENA]
¡û
>W1511336361
JRAE01000063
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
133011
132924
-
Ser
GCT
[ENA]
¡û
>W1511336418
JRAF01000057
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
46077
45990
-
Ser
GCT
[ENA]
¡û
>W1511336458
JRAG01000022
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
56813
56726
-
Ser
GCT
[ENA]
¡û
>W1511336538
JRAI01000039
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
49817
49904
+
Ser
GCT
[ENA]
¡û
>W1511336571
JRAJ01000003
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
57246
57159
-
Ser
GCT
[ENA]
¡û
>W1511336643
JRAK01000134
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
157
244
+
Ser
GCT
[ENA]
¡û
>W1511336652
JRAL01000009
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
49546
49459
-
Ser
GCT
[ENA]
¡û
>W1511336838
JRAQ01000022
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
161173
161260
+
Ser
GCT
[ENA]
¡û
>W1511336959
JRAT01000031
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
12516
12603
+
Ser
GCT
[ENA]
¡û
>W1511343946
JRFD01000047
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
32225
32312
+
Ser
GCT
[ENA]
¡û
>C161018143
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
2125499
2125586
+
Ser
GCT
[Ensembl]
¡û
>C161046930
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1649456
1649543
+
Ser
GCT
-
¡û
>C161051775
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
1548573
1548660
+
Ser
GCT
-
¡û
>W121073576
AJZS01000092
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
23544
23631
+
Ser
GCT
[ENA]
¡û
>W1610060517
BCBV01000004
Bacteroidota
Porphyromonas gingivalis [BCBV]
5392
5479
+
Ser
GCT
[ENA]
¡û
>W1610784256
LOEL01000045
Bacteroidota
Porphyromonas gingivalis [LOEL]
19058
19145
+
Ser
GCT
[ENA]
¡û
>W1710017896
ASYM01000096
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
37052
37139
+
Ser
GCT
[ENA]
¡û
>W1710017912
ASYN01000024
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
19176
19263
+
Ser
GCT
[ENA]
¡û
>W1710017968
ASYO01000073
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
18937
19024
+
Ser
GCT
[ENA]
¡û
>W1710018022
ASYP01000105
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
31969
32056
+
Ser
GCT
[ENA]
¡û
>W1710057772
BCBV01000004
Bacteroidota
Porphyromonas gingivalis [BCBV]
5392
5479
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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