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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246534 (69 seq.)
>W1711224210
LXTW01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
294849
294924
+
Val
TAC
[ENA]
¡û
>W1711224224
LXTW01000032
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
251625
251700
+
Val
TAC
[ENA]
¡û
>W1711268981
LZDM01000007
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
166979
167054
+
Val
TAC
[ENA]
¡û
>W1711268999
LZDM01000023
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
223944
223869
-
Val
TAC
[ENA]
¡û
>W1711269013
LZDN01000001
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
221400
221325
-
Val
TAC
[ENA]
¡û
>W1711269034
LZDN01000013
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
10752
10677
-
Val
TAC
[ENA]
¡û
>W1711269211
LZDR01000071
Gammaproteobacteria
Moraxella lacunata [LZDR]
2161
2086
-
Val
TAC
[ENA]
¡û
>W1711269215
LZDR01000082
Gammaproteobacteria
Moraxella lacunata [LZDR]
30272
30197
-
Val
TAC
[ENA]
¡û
>W1711282068
LZMS01000061
Gammaproteobacteria
Moraxella lacunata [LZMS]
375
300
-
Val
TAC
[ENA]
¡û
>W1711282072
LZMS01000074
Gammaproteobacteria
Moraxella lacunata [LZMS]
19859
19934
+
Val
TAC
[ENA]
¡û
>W131228768
AUGF01000016
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
17616
17691
+
Val
TAC
[ENA]
¡û
>W131228783
AUGF01000038
Gammaproteobacteria
Moraxella caprae DSM 19149 [AUGF]
19033
19108
+
Val
TAC
[ENA]
¡û
>W1711765725
MUXU01000025
Gammaproteobacteria
Moraxella caviae [MUXU]
79907
79832
-
Val
TAC
[ENA]
¡û
>W1711765731
MUXU01000029
Gammaproteobacteria
Moraxella caviae [MUXU]
14813
14888
+
Val
TAC
[ENA]
¡û
>W1711765763
MUXV01000002
Gammaproteobacteria
Moraxella bovis [MUXV]
138398
138323
-
Val
TAC
[ENA]
¡û
>W1711765791
MUXV01000040
Gammaproteobacteria
Moraxella bovis [MUXV]
14419
14344
-
Val
TAC
[ENA]
¡û
>W1711799830
MXAN01000004
Gammaproteobacteria
Moraxella lacunata [MXAN]
44437
44512
+
Val
TAC
[ENA]
¡û
>W1711799853
MXAN01000079
Gammaproteobacteria
Moraxella lacunata [MXAN]
17804
17879
+
Val
TAC
[ENA]
¡û
>W1711799940
MXAP01000066
Gammaproteobacteria
Moraxella equi [MXAP]
15228
15153
-
Val
TAC
[ENA]
¡û
>W1711799943
MXAP01000080
Gammaproteobacteria
Moraxella equi [MXAP]
16482
16407
-
Val
TAC
[ENA]
¡û
>WENV180006825
FLRZ01000894
[FLRZ] metagenome; saliva
2239
2314
+
Val
TAC
[ENA]
¢þ
>WENV180006827
FLRZ01000897
[FLRZ] metagenome; saliva
1102
1027
-
Val
TAC
[ENA]
¢þ
>W141055119
AOMT01000005
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
498195
498270
+
Val
TAC
[ENA]
¡û
>W141055127
AOMT01000022
Gammaproteobacteria
Moraxella bovoculi 237 [AOMT]
194421
194496
+
Val
TAC
[ENA]
¡û
>WENV180711431
ODFN01007768
[ODFN] human metagenome; G_DNA_Anterior nares
69
144
+
Val
TAC
[ENA]
¢þ
>WENV180711639
ODFQ01000035
[ODFQ] human metagenome; G_DNA_Anterior nares
10544
10619
+
Val
TAC
[ENA]
¢þ
>WENV180793942
ODIX01001331
[ODIX] human metagenome; G_DNA_Anterior nares
392
317
-
Val
TAC
[ENA]
¢þ
>WENV180838864
ODKH01000005
[ODKH] human metagenome; G_DNA_Anterior nares
85748
85673
-
Val
TAC
[ENA]
¢þ
>WENV180838882
ODKH01000051
[ODKH] human metagenome; G_DNA_Anterior nares
10032
9957
-
Val
TAC
[ENA]
¢þ
>WENV180844796
ODKO01007925
[ODKO] human metagenome; G_DNA_Anterior nares
8
83
+
Val
TAC
[ENA]
¢þ
>WENV180878951
ODLY01009977
[ODLY] human metagenome; G_DNA_Anterior nares
168
93
-
Val
TAC
[ENA]
¢þ
>WENV180937549
ODTW01008833
[ODTW] human metagenome; G_DNA_Anterior nares
148
223
+
Val
TAC
[ENA]
¢þ
>WENV180966771
ODUR01007641
[ODUR] human metagenome; G_DNA_Anterior nares
225
150
-
Val
TAC
[ENA]
¢þ
>WENV180972504
ODUV01003170
[ODUV] human metagenome; G_DNA_Anterior nares
30
105
+
Val
TAC
[ENA]
¢þ
>WENV180984629
ODVI01000001
[ODVI] human metagenome; G_DNA_Anterior nares
148246
148321
+
Val
TAC
[ENA]
¢þ
>WENV180984631
ODVI01000002
[ODVI] human metagenome; G_DNA_Anterior nares
166372
166447
+
Val
TAC
[ENA]
¢þ
>WENV181082441
OEAU01000859
[OEAU] human metagenome; G_DNA_Anterior nares
312
237
-
Val
TAC
[ENA]
¢þ
>WENV181199452
OERH01000739
[OERH] metagenome; water of meat washing
6032
6107
+
Val
TAC
[ENA]
¢þ
>WENV170594414
FUFK011310311
[FUFK] metagenome; unknown
354
429
+
Val
TAC
[ENA]
¢þ
>C181190895
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
1852414
1852339
-
Val
TAC
-
¡û
>C181190898
CP030241
Gammaproteobacteria
Moraxella bovis [CP030241]
1435705
1435630
-
Val
TAC
-
¡û
>C191008773
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
674691
674766
+
Val
TAC
-
¡û
>C191008778
CP011380
Gammaproteobacteria
Moraxella bovoculi 57922 [CP011380]
1202163
1202238
+
Val
TAC
-
¡û
>C161032118
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
750849
750924
+
Val
TAC
[Ensembl]
¡û
>C161032123
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
1320915
1320990
+
Val
TAC
[Ensembl]
¡û
>C161034444
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
681254
681329
+
Val
TAC
[Ensembl]
¡û
>C161034449
CP011374
Gammaproteobacteria
Moraxella bovoculi 58069 [CP011374]
1233652
1233727
+
Val
TAC
[Ensembl]
¡û
>C161034498
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
848874
848949
+
Val
TAC
-
¡û
>C161034521
CP011376
Gammaproteobacteria
Moraxella bovoculi 22581 [CP011376]
1069946
1069871
-
Val
TAC
-
¡û
>C161034546
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1208364
1208439
+
Val
TAC
-
¡û
>C161034567
CP011377
Gammaproteobacteria
Moraxella bovoculi 23343 [CP011377]
1429472
1429397
-
Val
TAC
-
¡û
>C161034595
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
1315831
1315906
+
Val
TAC
[Ensembl]
¡û
>C161034616
CP011378
Gammaproteobacteria
Moraxella bovoculi 28389 [CP011378]
1536896
1536821
-
Val
TAC
[Ensembl]
¡û
>C161034646
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
1238628
1238703
+
Val
TAC
-
¡û
>C161034667
CP011379
Gammaproteobacteria
Moraxella bovoculi 33362 [CP011379]
1459937
1459862
-
Val
TAC
-
¡û
>C161034695
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
664560
664635
+
Val
TAC
-
¡û
>C161034700
CP011381
Gammaproteobacteria
Moraxella bovoculi 58086 [CP011381]
1196080
1196155
+
Val
TAC
-
¡û
>W1610076279
BCYQ01000003
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
50988
51063
+
Val
TAC
[ENA]
¡û
>W1611008581
LXTW01000012
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
294849
294924
+
Val
TAC
[ENA]
¡û
>W1611008595
LXTW01000032
Gammaproteobacteria
Moraxella nonliquefaciens [LXTW]
251625
251700
+
Val
TAC
[ENA]
¡û
>W1611029793
LZDM01000007
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
166979
167054
+
Val
TAC
[ENA]
¡û
>W1611029811
LZDM01000023
Gammaproteobacteria
Moraxella nonliquefaciens [LZDM]
223944
223869
-
Val
TAC
[ENA]
¡û
>W1611029825
LZDN01000001
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
221400
221325
-
Val
TAC
[ENA]
¡û
>W1611029846
LZDN01000013
Gammaproteobacteria
Moraxella nonliquefaciens [LZDN]
10752
10677
-
Val
TAC
[ENA]
¡û
>W1611030023
LZDR01000071
Gammaproteobacteria
Moraxella lacunata [LZDR]
2161
2086
-
Val
TAC
[ENA]
¡û
>W1611030027
LZDR01000082
Gammaproteobacteria
Moraxella lacunata [LZDR]
30272
30197
-
Val
TAC
[ENA]
¡û
>W1611041279
LZMS01000061
Gammaproteobacteria
Moraxella lacunata [LZMS]
375
300
-
Val
TAC
[ENA]
¡û
>W1611041283
LZMS01000074
Gammaproteobacteria
Moraxella lacunata [LZMS]
19859
19934
+
Val
TAC
[ENA]
¡û
>W1710074094
BCYQ01000003
Gammaproteobacteria
Moraxella oblonga NBRC 102422 [BCYQ]
50988
51063
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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