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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246536 (46 seq.)
>W131001265
AGXA01000001
Bacillota
Alloiococcus otitis ATCC 51267 [AGXA]
488
561
+
Val
TAC
[ENA]
¡û
>W131001283
AGXA01000010
Bacillota
Alloiococcus otitis ATCC 51267 [AGXA]
2567
2494
-
Val
TAC
[ENA]
¡û
>W131001308
AGXA01000021
Bacillota
Alloiococcus otitis ATCC 51267 [AGXA]
90919
90846
-
Val
TAC
[ENA]
¡û
>W1711766248
MUYF01000003
Bacillota
Dolosigranulum pigrum [MUYF]
1468176
1468104
-
Val
TAC
[ENA]
¡û
>W1711766255
MUYF01000003
Bacillota
Dolosigranulum pigrum [MUYF]
1078029
1077957
-
Val
TAC
[ENA]
¡û
>WENV180711509
ODFP01000005
[ODFP] human metagenome; G_DNA_Anterior nares
66
142
+
Val
TAC
[ENA]
¢þ
>WENV180711755
ODFQ01020120
[ODFQ] human metagenome; G_DNA_Anterior nares
189
117
-
Val
TAC
[ENA]
¢þ
>WENV180732092
ODGX01000005
[ODGX] human metagenome; G_DNA_Anterior nares
33367
33295
-
Val
TAC
[ENA]
¢þ
>WENV180766357
ODIE01020166
[ODIE] human metagenome; G_DNA_Anterior nares
52
128
+
Val
TAC
[ENA]
¢þ
>WENV180836626
ODKF01008078
[ODKF] human metagenome; G_DNA_Anterior nares
116
44
-
Val
TAC
[ENA]
¢þ
>WENV180838941
ODKH01001330
[ODKH] human metagenome; G_DNA_Anterior nares
594
666
+
Val
TAC
[ENA]
¢þ
>WENV180875526
ODLS01000002
[ODLS] human metagenome; G_DNA_Anterior nares
3735
3807
+
Val
TAC
[ENA]
¢þ
>WENV180878761
ODLY01000017
[ODLY] human metagenome; G_DNA_Anterior nares
67
139
+
Val
TAC
[ENA]
¢þ
>WENV180913503
ODSU01008353
[ODSU] human metagenome; G_DNA_Anterior nares
486
414
-
Val
TAC
[ENA]
¢þ
>WENV180914496
ODSX01001576
[ODSX] human metagenome; G_DNA_Anterior nares
46
118
+
Val
TAC
[ENA]
¢þ
>WENV180916344
ODTC01012598
[ODTC] human metagenome; G_DNA_Anterior nares
67
139
+
Val
TAC
[ENA]
¢þ
>WENV180918096
ODTF01000200
[ODTF] human metagenome; G_DNA_Anterior nares
4942
4870
-
Val
TAC
[ENA]
¢þ
>WENV180984708
ODVI01006184
[ODVI] human metagenome; G_DNA_Anterior nares
174
102
-
Val
TAC
[ENA]
¢þ
>WENV181010127
ODWG01001396
[ODWG] human metagenome; G_DNA_Anterior nares
1442
1514
+
Val
TAC
[ENA]
¢þ
>WENV181030356
ODXG01003473
[ODXG] human metagenome; G_DNA_Anterior nares
321
249
-
Val
TAC
[ENA]
¢þ
>WENV181032227
ODXL01000523
[ODXL] human metagenome; G_DNA_Anterior nares
67
139
+
Val
TAC
[ENA]
¢þ
>WENV181131525
OEGC01001694
[OEGC] human metagenome; G_DNA_Anterior nares
998
926
-
Val
TAC
[ENA]
¢þ
>C191035476
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
426984
427058
+
Val
TAC
-
¡û
>C191035505
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
474196
474270
+
Val
TAC
-
¡û
>C191035514
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1821825
1821751
-
Val
TAC
-
¡û
>C191092795
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
369542
369616
+
Val
TAC
-
¡û
>C191092824
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
403154
403228
+
Val
TAC
-
¡û
>C191092833
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
1710817
1710743
-
Val
TAC
-
¡û
>W1910841899
NAJJ01000020
Bacillota
Dolosigranulum pigrum KPL1914 [NAJJ]
161
233
+
Val
TAC
[ENA]
¡û
>W1910842129
NAQP01000029
Bacillota
Dolosigranulum pigrum KPL1939_CDC4792-99 [NAQP]
150
222
+
Val
TAC
[ENA]
¡û
>W1910842190
NAQQ01000032
Bacillota
Dolosigranulum pigrum KPL1938_CDC4791-99 [NAQQ]
156
84
-
Val
TAC
[ENA]
¡û
>W1910842216
NAQR01000018
Bacillota
Dolosigranulum pigrum KPL1937_CDC4199-99 [NAQR]
273
345
+
Val
TAC
[ENA]
¡û
>W1910842242
NAQR01000050
Bacillota
Dolosigranulum pigrum KPL1937_CDC4199-99 [NAQR]
26490
26418
-
Val
TAC
[ENA]
¡û
>W1910842314
NAQS01000068
Bacillota
Dolosigranulum pigrum KPL1934_CDC4709-98 [NAQS]
156
84
-
Val
TAC
[ENA]
¡û
>W1910842325
NAQT01000007
Bacillota
Dolosigranulum pigrum KPL1933_CDC4545-98 [NAQT]
150
222
+
Val
TAC
[ENA]
¡û
>W1910842332
NAQT01000016
Bacillota
Dolosigranulum pigrum KPL1933_CDC4545-98 [NAQT]
26567
26495
-
Val
TAC
[ENA]
¡û
>W1910842382
NAQU01000018
Bacillota
Dolosigranulum pigrum KPL1932_CDC4420-98 [NAQU]
150
222
+
Val
TAC
[ENA]
¡û
>W1910842453
NAQV01000055
Bacillota
Dolosigranulum pigrum KPL1931_CDC4294-98 [NAQV]
139
63
-
Val
TAC
[ENA]
¡û
>W1910842454
NAQV01000061
Bacillota
Dolosigranulum pigrum KPL1931_CDC4294-98 [NAQV]
138
66
-
Val
TAC
[ENA]
¡û
>W1910842497
NAQW01000037
Bacillota
Dolosigranulum pigrum KPL1930_CDC2949-98 [NAQW]
156
84
-
Val
TAC
[ENA]
¡û
>W1910842550
NAQX01000041
Bacillota
Dolosigranulum pigrum KPL1922_CDC39-95 [NAQX]
156
84
-
Val
TAC
[ENA]
¡û
>W121009298
AGEF01000016
Bacillota
Dolosigranulum pigrum ATCC 51524 [AGEF]
98658
98586
-
Val
TAC
[ENA]
¡û
>W1610030938
AYYK01000020
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
692
618
-
Val
TAC
[ENA]
¡û
>W1610030967
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
83535
83459
-
Val
TAC
[ENA]
¡û
>W1710027890
AYYK01000020
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
692
618
-
Val
TAC
[ENA]
¡û
>W1710027919
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
83535
83459
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK