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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246751 (47 seq.)
>W131106841
APFI01000110
Thermodesulfobacteriota
Desulfovibrio sp. Dsv1 [APFI]
1095
1020
-
Val
CAC
[ENA]
¡û
>W131215415
ATUZ01000014
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
360680
360605
-
Val
CAC
[ENA]
¡û
>W131224637
AUCY01000023
Thermodesulfobacteriota
Desulfovibrio cuneatus DSM 11391 [AUCY]
40181
40106
-
Val
CAC
[ENA]
¡û
>WENV180711273
ODFM01125039
[ODFM] human metagenome; G_DNA_Stool
192
267
+
Val
CAC
[ENA]
¢þ
>WENV180957783
ODUK01204236
[ODUK] human metagenome; G_DNA_Stool
126
201
+
Val
CAC
[ENA]
¢þ
>WENV180963018
ODUN01053938
[ODUN] human metagenome; G_DNA_Stool
713
788
+
Val
CAC
[ENA]
¢þ
>WENV181024293
ODWX01053867
[ODWX] human metagenome; G_DNA_Stool
217
142
-
Val
CAC
[ENA]
¢þ
>WENV181149382
OEHT01061194
[OEHT] human metagenome; G_DNA_Stool
184
259
+
Val
CAC
[ENA]
¢þ
>WENV181451590
OGDY01008929
[OGDY] metagenome; Human gut stool
4483
4408
-
Val
CAC
[ENA]
¢þ
>WENV181525120
OGHJ01000018
[OGHJ] metagenome; Human gut stool
228754
228679
-
Val
CAC
[ENA]
¢þ
>WENV181714902
OGPR01009476
[OGPR] human gut metagenome; faeces
768
843
+
Val
CAC
[ENA]
¢þ
>WENV181893434
OGXQ01001842
[OGXQ] human gut metagenome; faeces
14384
14459
+
Val
CAC
[ENA]
¢þ
>WENV181995948
OHAT01017817
[OHAT] human gut metagenome; faeces
2020
2095
+
Val
CAC
[ENA]
¢þ
>WENV182005858
OHBE01025322
[OHBE] human gut metagenome; faeces
708
783
+
Val
CAC
[ENA]
¢þ
>WENV182005953
OHBE01037187
[OHBE] human gut metagenome; faeces
894
969
+
Val
CAC
[ENA]
¢þ
>WENV182535556
OIXG01044922
[OIXG] human gut metagenome; faeces
1135
1060
-
Val
CAC
[ENA]
¢þ
>WENV182537779
OIXH01017525
[OIXH] human gut metagenome; faeces
188
113
-
Val
CAC
[ENA]
¢þ
>WENV182596056
OJIY01000533
[OJIY] metagenome; faeces
7397
7472
+
Val
CAC
[ENA]
¢þ
>WENV182727637
OJPW01000041
[OJPW] human gut metagenome; stool sample
130404
130329
-
Val
CAC
[ENA]
¢þ
>WENV182731121
OJPZ01024660
[OJPZ] human gut metagenome; stool sample
1054
1129
+
Val
CAC
[ENA]
¢þ
>WENV182882646
OKSB01000965
[OKSB] human gut metagenome; faeces
1102
1027
-
Val
CAC
[ENA]
¢þ
>WENV182891386
OKSH01000924
[OKSH] human gut metagenome; faeces
27591
27516
-
Val
CAC
[ENA]
¢þ
>WENV183223434
OLQM01020991
[OLQM] human gut metagenome; faeces
1444
1519
+
Val
CAC
[ENA]
¢þ
>WENV183371536
OLXV01042708
[OLXV] human gut metagenome; feces
577
502
-
Val
CAC
[ENA]
¢þ
>WENV183492818
OMGI01000917
[OMGI] human gut metagenome; human gut
18322
18247
-
Val
CAC
[ENA]
¢þ
>WENV183501567
OMGS01000706
[OMGS] human gut metagenome; human gut
14595
14670
+
Val
CAC
[ENA]
¢þ
>WENV183507772
OMGY01068042
[OMGY] human gut metagenome; human gut
152
77
-
Val
CAC
[ENA]
¢þ
>WENV183775918
PPYF01074156
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2522
2447
-
Val
CAC
[ENA]
¢þ
>WENV183788899
PPYF01371007
[PPYF] human gut metagenome; stool from patient with Crohn's disease
9774
9849
+
Val
CAC
[ENA]
¢þ
>WENV170071054
CDZQ01044710
[CDZQ] gut metagenome; human stools
11042
10967
-
Val
CAC
[ENA]
¢þ
>WENV170715495
LQAB01002455
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
5899
5974
+
Val
CAC
[ENA]
¢þ
>WENV170715527
LQAB01004344
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
2082
2157
+
Val
CAC
[ENA]
¢þ
>WENV170715530
LQAB01004388
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
261
336
+
Val
CAC
[ENA]
¢þ
>WENV170715661
LQAB01009179
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
575
500
-
Val
CAC
[ENA]
¢þ
>WENV170715709
LQAB01012045
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
648
573
-
Val
CAC
[ENA]
¢þ
>WENV170715892
LQAB01019239
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
318
393
+
Val
CAC
[ENA]
¢þ
>W09118231
ACCT01000004
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
195195
195120
-
Val
CAC
[ENA]
¡û
>C181001568
AP017368
Thermodesulfobacteriota
Candidatus Desulfovibrio trichonymphae Rs-N31 [AP017368]
446205
446130
-
Val
CAC
-
¡û
>C181081087
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
155671
155596
-
Val
CAC
-
¡û
>C191149697
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
3151706
3151781
+
Val
CAC
-
¡û
>C09103874
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
157734
157659
-
Val
CAC
[Ensembl]
¡û
>W1810792943
QRJJ01000013
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
6114
6189
+
Val
CAC
[ENA]
¡û
>W10111685
ADDR01000046
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
3327
3252
-
Val
CAC
[ENA]
¡û
>W11107015
ACWM01000064
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
3411
3336
-
Val
CAC
[ENA]
¡û
>W11114612
ADDR01000046
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
3327
3252
-
Val
CAC
[ENA]
¡û
>C161068983
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
3436020
3436095
+
Val
CAC
[Ensembl]
¡û
>W1710579868
FPIW01000026
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
35757
35832
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK