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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.246975 (73 seq.)
>W131169496
ARET01000071
Bacillota
Blautia producta ATCC 27340 = DSM 2950 [ARET]
118319
118237
-
Leu
TAG
[ENA]
¡û
>W131238119
AUUC01000002
Bacillota
Blautia producta ATCC 27340 = DSM 2950 [AUUC]
337032
337114
+
Leu
TAG
[ENA]
¡û
>W1712036114
NFHH01000006
Bacillota
Blautia sp. An81 [NFHH]
41373
41291
-
Leu
TAG
[ENA]
¡û
>W1712037451
NFIF01000009
Bacillota
Blautia sp. An46 [NFIF]
77298
77380
+
Leu
TAG
[ENA]
¡û
>WENV180123441
OASW01002311
[OASW] human gut metagenome; faeces
742
824
+
Leu
TAG
[ENA]
¡û
>WENV180123897
OASX01000491
[OASX] human gut metagenome; faeces
4677
4758
+
Leu
TAG
[ENA]
¡û
>WENV180125196
OASY01001219
[OASY] human gut metagenome; faeces
11924
11842
-
Leu
TAG
[ENA]
¡û
>WENV180126002
OASZ01000305
[OASZ] human gut metagenome; faeces
34400
34318
-
Leu
TAG
[ENA]
¡û
>WENV180139907
OATT01001647
[OATT] human gut metagenome; faeces
95
178
+
Leu
TAG
[ENA]
¡û
>WENV180141032
OATU01001800
[OATU] human gut metagenome; faeces
11808
11726
-
Leu
TAG
[ENA]
¡û
>WENV180148348
OAUK01000023
[OAUK] human gut metagenome; faeces
53802
53720
-
Leu
TAG
[ENA]
¡û
>WENV180162330
OAVG01001539
[OAVG] human gut metagenome; faeces
161
78
-
Leu
TAG
[ENA]
¡û
>WENV180182232
OAWO01002780
[OAWO] human gut metagenome; faeces
3566
3484
-
Leu
TAG
[ENA]
¡û
>WENV180307702
OBJQ01001366
[OBJQ] human gut metagenome; human gut
12810
12728
-
Leu
TAG
[ENA]
¡û
>WENV180446514
OBXC01000217
[OBXC] human gut metagenome; faeces
12551
12469
-
Leu
TAG
[ENA]
¡û
>WENV180454221
OBXM01010423
[OBXM] human gut metagenome; faeces
1318
1398
+
Leu
TAG
[ENA]
¡û
>WENV180482395
OBZG01000477
[OBZG] human gut metagenome; faeces
9616
9534
-
Leu
TAG
[ENA]
¡û
>WENV180506675
OCAS01002672
[OCAS] human gut metagenome; faeces
944
1026
+
Leu
TAG
[ENA]
¡û
>WENV181198503
OERE01005455
[OERE] metagenome; Caecal content
151
69
-
Leu
TAG
[ENA]
¡û
>WENV181204011
OERX01016226
[OERX] metagenome; Caecal content
562
482
-
Leu
TAG
[ENA]
¡û
>WENV181600156
OGLD01000619
[OGLD] metagenome; Human gut stool
115
197
+
Leu
TAG
[ENA]
¡û
>WENV181834340
OGUR01000098
[OGUR] metagenome; Human gut stool
36861
36779
-
Leu
TAG
[ENA]
¡û
>WENV181887140
OGXL01001347
[OGXL] human gut metagenome; faeces
116
198
+
Leu
TAG
[ENA]
¡û
>WENV181890018
OGXN01003201
[OGXN] human gut metagenome; faeces
46
128
+
Leu
TAG
[ENA]
¡û
>WENV181896887
OGXS01005924
[OGXS] human gut metagenome; faeces
3558
3476
-
Leu
TAG
[ENA]
¡û
>WENV181995787
OHAT01009894
[OHAT] human gut metagenome; faeces
52
133
+
Leu
TAG
[ENA]
¡û
>WENV182409523
OIFJ01000001
[OIFJ] human gut metagenome; stool
423153
423071
-
Leu
TAG
[ENA]
¡û
>WENV182803524
OJUL01002476
[OJUL] human gut metagenome; human gut
92
174
+
Leu
TAG
[ENA]
¡û
>WENV182961458
OKWL01000007
[OKWL] human gut metagenome; stool
233091
233009
-
Leu
TAG
[ENA]
¡û
>WENV183101790
OLNH01001451
[OLNH] human gut metagenome; faeces
115
197
+
Leu
TAG
[ENA]
¡û
>WENV183144899
OLOL01014435
[OLOL] human gut metagenome; faeces
723
641
-
Leu
TAG
[ENA]
¡û
>WENV183166946
OLOY01005274
[OLOY] human gut metagenome; faeces
1494
1574
+
Leu
TAG
[ENA]
¡û
>WENV183218137
OLQI01018317
[OLQI] human gut metagenome; faeces
1164
1082
-
Leu
TAG
[ENA]
¡û
>WENV183241314
OLRA01092739
[OLRA] human gut metagenome; faeces
503
585
+
Leu
TAG
[ENA]
¡û
>WENV183255915
OLRK01002366
[OLRK] human gut metagenome; faeces
115
197
+
Leu
TAG
[ENA]
¡û
>WENV183290434
OLSH01000272
[OLSH] human gut metagenome; faeces
34400
34318
-
Leu
TAG
[ENA]
¡û
>WENV183517812
OMNP01015769
[OMNP] human gut metagenome; feces
833
914
+
Leu
TAG
[ENA]
¡û
>WENV183769974
PPYE01432501
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1296
1213
-
Leu
TAG
[ENA]
¡û
>WENV183792096
PPYF01450737
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1055
973
-
Leu
TAG
[ENA]
¡û
>WENV170637547
JFBN01329816
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1881
1801
-
Leu
TAG
[ENA]
¡û
>WENV170637825
JFBN01364372
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1103
1023
-
Leu
TAG
[ENA]
¡û
>C191147551
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
6330163
6330081
-
Leu
TAG
-
¡û
>W141732831
JNKJ01000017
Bacillota
Blautia schinkii DSM 10518 [JNKJ]
140255
140336
+
Leu
TAG
[ENA]
¡û
>W1910237437
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52408
52490
+
Leu
TAG
[ENA]
¡û
>W1911180261
NQOF01000007
Bacillota
Blautia sp. KB1 [NQOF]
128543
128461
-
Leu
TAG
[ENA]
¡û
>W1911532876
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1350937
1350855
-
Leu
TAG
[ENA]
¡û
>W1810252118
PQGB01000555
Bacillota
Blautia producta DSM 3507 [PQGB]
504
587
+
Leu
TAG
[ENA]
¡û
>W1810873751
QUER01000004
Bacillota
Blautia sp. OF01-4LB [QUER]
33264
33181
-
Leu
TAG
[ENA]
¡û
>W1810877515
QUHN01000003
Bacillota
Blautia sp. AF13-16 [QUHN]
283280
283363
+
Leu
TAG
[ENA]
¡û
>W2010210560
CABHIG010000006
Bacillota
Erysipelatoclostridium ramosum 4928STDY7387865 [CABHIG]
291396
291477
+
Leu
TAG
[ENA]
¡û
>W2010249496
CABIXO020000033
Bacillota
Lachnospiraceae bacterium [CABIXO]
16105
16023
-
Leu
TAG
[ENA]
¡û
>W2010253626
CABJAF020000005
Bacillota
Blautia producta [CABJAF]
93353
93271
-
Leu
TAG
[ENA]
¡û
>W2010276700
CABLBP020000001
Bacillota
Blautia producta [CABLBP]
118319
118237
-
Leu
TAG
[ENA]
¡û
>W2010285085
CABMKU010000007
Bacillota
Blautia marasmi [CABMKU]
128543
128461
-
Leu
TAG
[ENA]
¡û
>W2010386646
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52408
52490
+
Leu
TAG
[ENA]
¡û
>W2010485662
JAAITA010000003
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
190219
190301
+
Leu
TAG
[ENA]
¡û
>W2010486743
JAAITU010000053
Bacillota
Blautia glucerasea MSK.21.93 [JAAITU]
7871
7953
+
Leu
TAG
[ENA]
¡û
>W2011036193
NQOF01000007
Bacillota
Blautia sp. KB1 [NQOF]
128543
128461
-
Leu
TAG
[ENA]
¡û
>W2011165563
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1350937
1350855
-
Leu
TAG
[ENA]
¡û
>W2110101249
CAJFMH010000014
Bacillota
Blautia sp. An81 [CAJFMH]
163
245
+
Leu
TAG
[ENA]
¡û
>W2110244950
JACOOU010000001
Bacillota
Blautia sp. NSJ-34 [JACOOU]
246124
246041
-
Leu
TAG
[ENA]
¡û
>C211050562
CP039126
Bacillota
Blautia producta DSM 2950 [CP039126]
1007815
1007897
+
Leu
TAG
-
¡û
>W2110706511
JAIVMH010000001
Bacillota
Blautia sp. RD014234 [JAIVMH]
2358793
2358711
-
Leu
TAG
[ENA]
¡û
>W2110709591
JAIXOC010000002
Bacillota
Blautia sp. RD014232 [JAIXOC]
1028965
1029048
+
Leu
TAG
[ENA]
¡û
>W2110720899
JAJBOG010000003
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
55391
55309
-
Leu
TAG
[ENA]
¡û
>W2110728003
JAJCKP010000062
Bacillota
Blautia marasmi DFI.6.18 [JAJCKP]
25345
25263
-
Leu
TAG
[ENA]
¡û
>W2110734349
JAJCRV010000007
Bacillota
Blautia marasmi SL.2.02 [JAJCRV]
81961
82042
+
Leu
TAG
[ENA]
¡û
>C231187924
CP084061
Bacillota
Blautia sp. NBRC 113351 [CP084061]
5230261
5230344
+
Leu
TAG
-
¡û
>C231347123
CP094680
Bacillota
Clostridia bacterium UC5.1-1D4 VE303-05 [CP094680]
5288912
5288994
+
Leu
TAG
-
¡û
>C241129847
CP048626
Bacillota
Blautia producta ATCC 27340 = DSM 2950 JCM 1471 [CP048626]
2145453
2145371
-
Leu
TAG
-
¡û
>W1511303251
JPJF01000064
Bacillota
Blautia producta ER3 [JPJF]
139
221
+
Leu
TAG
[ENA]
¡û
>W1610058250
BBZR01000029
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
32937
32854
-
Leu
TAG
[ENA]
¡û
>W1710055009
BBZR01000029
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
32937
32854
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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