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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247159 (17 seq.)
>W1711340869
MCCA01000039
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCCA]
6582
6657
+
Glu
TTC
[ENA]
¡û
>WENV180292460
OBIV01456179
[OBIV] soil metagenome; Clay
358
283
-
Glu
TTC
[ENA]
¢þ
>WENV181166319
OEIU01000086
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75582
75507
-
Glu
TTC
[ENA]
¢þ
>WENV170335950
CESZ01109537
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
996
1070
+
Glu
TTC
[ENA]
¢þ
>WENV170426926
CEUQ01129602
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
276
+
Glu
TTC
[ENA]
¢þ
>WENV170929069
MDTG01144425
[MDTG] marine metagenome; seawater
2784
2859
+
Glu
TTC
[ENA]
¢þ
>WENV170933620
MDTG01223766
[MDTG] marine metagenome; seawater
18
93
+
Glu
TTC
[ENA]
¢þ
>WENV170941163
MDTG01355713
[MDTG] marine metagenome; seawater
80
5
-
Glu
TTC
[ENA]
¢þ
>C191158512
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
1000175
1000250
+
Glu
TTC
-
¡û
>C191158513
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
1000290
1000365
+
Glu
TTC
-
¡û
>C191209333
LR134374
Gammaproteobacteria
Legionella spiritensis NCTC12082 [LR134374]
1227589
1227514
-
Glu
TTC
-
¡û
>C191213276
LR134510
Gammaproteobacteria
Actinobacillus delphinicola NCTC12871 [LR134510]
792151
792226
+
Glu
TTC
-
¡û
>C191213286
LR134510
Gammaproteobacteria
Actinobacillus delphinicola NCTC12871 [LR134510]
1039989
1040064
+
Glu
TTC
-
¡û
>C191213316
LR134510
Gammaproteobacteria
Actinobacillus delphinicola NCTC12871 [LR134510]
685610
685535
-
Glu
TTC
-
¡û
>W1911136838
NOVK01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
55411
55336
-
Glu
TTC
[ENA]
¡û
>C151103455
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
2444740
2444665
-
Glu
TTC
[Ensembl]
¡û
>C151103456
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
2444488
2444413
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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