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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247473 (118 seq.)
>W1710876292
LMPC01000012
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
787039
786966
-
Gly
GCC
[ENA]
¡û
>W1710876295
LMPC01000012
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
786678
786605
-
Gly
GCC
[ENA]
¡û
>W1710880407
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
82662
82589
-
Gly
GCC
[ENA]
¡û
>W1710880410
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
82307
82234
-
Gly
GCC
[ENA]
¡û
>W1710909439
LNQM01000002
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
175193
175120
-
Gly
GCC
[ENA]
¡û
>W1710909442
LNQM01000002
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
174837
174764
-
Gly
GCC
[ENA]
¡û
>W1710916098
LNUT01000004
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
1299484
1299411
-
Gly
GCC
[ENA]
¡û
>W1710916101
LNUT01000004
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
1299126
1299053
-
Gly
GCC
[ENA]
¡û
>W1710916188
LNUV01000001
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
419801
419874
+
Gly
GCC
[ENA]
¡û
>W1710916191
LNUV01000001
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
420162
420235
+
Gly
GCC
[ENA]
¡û
>W1710916193
LNUV01000001
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
420390
420465
+
Gly
GCC
[ENA]
¡û
>W1711124444
LUKC01000055
Actinomycetota
Arthrobacter sp. D4 [LUKC]
30043
30116
+
Gly
GCC
[ENA]
¡û
>W1711124447
LUKC01000055
Actinomycetota
Arthrobacter sp. D4 [LUKC]
30400
30475
+
Gly
GCC
[ENA]
¡û
>W1711184083
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2044234
2044161
-
Gly
GCC
[ENA]
¡û
>W1711184086
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2043868
2043795
-
Gly
GCC
[ENA]
¡û
>W1711425186
MIEU01000012
Actinomycetota
Tersicoccus sp. Bi-70 [MIEU]
228369
228296
-
Gly
GCC
[ENA]
¡û
>W1711667005
MRDE01000005
Actinomycetota
Tersicoccus phoenicis [MRDE]
4003
4076
+
Gly
GCC
[ENA]
¡û
>W1711724049
MTPV01000009
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
59606
59679
+
Gly
GCC
[ENA]
¡û
>W1711724052
MTPV01000009
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
59975
60048
+
Gly
GCC
[ENA]
¡û
>W1711724054
MTPV01000009
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
60225
60298
+
Gly
GCC
[ENA]
¡û
>W1711724056
MTPV01000009
Actinomycetota
Arthrobacter sp. SRS-W-1-2016 [MTPV]
60475
60550
+
Gly
GCC
[ENA]
¡û
>C171040616
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
3011158
3011085
-
Gly
GCC
-
¡û
>C171040619
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
3010799
3010726
-
Gly
GCC
-
¡û
>C000083
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
1987872
1987800
-
Gly
GCC
[Ensembl]
¡û
>C000086
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
1987512
1987440
-
Gly
GCC
[Ensembl]
¡û
>C000088
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
1987283
1987208
-
Gly
GCC
[Ensembl]
¡û
>C001021
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
1863537
1863465
-
Gly
GCC
[Ensembl]
¡û
>C001024
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
1863175
1863103
-
Gly
GCC
[Ensembl]
¡û
>WENV180019629
FTCF01000058
[FTCF] metagenome; soil
339
266
-
Gly
GCC
[ENA]
¢þ
>WENV180019632
FTCF01000079
[FTCF] metagenome; soil
3715
3640
-
Gly
GCC
[ENA]
¢þ
>WENV180693208
OCZS011074981
[OCZS] soil metagenome; soil
198
271
+
Gly
GCC
[ENA]
¢þ
>WENV181168690
OEIU01660091
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
74
149
+
Gly
GCC
[ENA]
¢þ
>WENV181191526
OEPS010109252
[OEPS] soil metagenome; soil
115
188
+
Gly
GCC
[ENA]
¢þ
>W141217137
AZVJ01000002
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
79207
79134
-
Gly
GCC
[ENA]
¡û
>W141217140
AZVJ01000002
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
78846
78773
-
Gly
GCC
[ENA]
¡û
>W141217142
AZVJ01000002
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
78617
78542
-
Gly
GCC
[ENA]
¡û
>C181064989
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
2071550
2071477
-
Gly
GCC
-
¡û
>C181064992
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
2071190
2071117
-
Gly
GCC
-
¡û
>C181064994
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
2070960
2070885
-
Gly
GCC
-
¡û
>C181200610
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
2579256
2579329
+
Gly
GCC
-
¡û
>C181200634
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
4887341
4887414
+
Gly
GCC
-
¡û
>C181200635
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
4891510
4891583
+
Gly
GCC
-
¡û
>C191164629
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
3232026
3232099
+
Gly
GCC
-
¡û
>C191164632
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
3232385
3232458
+
Gly
GCC
-
¡û
>C191188231
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
3675021
3675094
+
Gly
GCC
-
¡û
>C191188234
CP041187
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502771 [CP041187]
3675379
3675452
+
Gly
GCC
-
¡û
>C191188298
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
2326285
2326212
-
Gly
GCC
-
¡û
>C191188301
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
2325922
2325849
-
Gly
GCC
-
¡û
>W141563808
JIAG01000009
Actinomycetota
Haematomicrobium sanguinis DSM 21259 [JIAG]
14031
13958
-
Gly
GCC
[ENA]
¡û
>W1910890087
NEUD01000656
Actinomycetota
Streptomyces sp. SM12 [NEUD]
2086
2013
-
Gly
GCC
[ENA]
¡û
>W1911566785
PCPC01000005
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
77677
77604
-
Gly
GCC
[ENA]
¡û
>W1911566788
PCPC01000005
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
77316
77243
-
Gly
GCC
[ENA]
¡û
>W1911566790
PCPC01000005
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
77088
77013
-
Gly
GCC
[ENA]
¡û
>W1911567558
PCPR01000003
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
163242
163169
-
Gly
GCC
[ENA]
¡û
>W1911567561
PCPR01000003
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
162881
162808
-
Gly
GCC
[ENA]
¡û
>W1911567563
PCPR01000003
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
162653
162578
-
Gly
GCC
[ENA]
¡û
>W1911798237
QYLP01000031
Actinomycetota
Arthrobacter celericrescens NEAU-SA2 [QYLP]
117668
117741
+
Gly
GCC
[ENA]
¡û
>W1911798240
QYLP01000031
Actinomycetota
Arthrobacter celericrescens NEAU-SA2 [QYLP]
118038
118111
+
Gly
GCC
[ENA]
¡û
>W1911798242
QYLP01000031
Actinomycetota
Arthrobacter celericrescens NEAU-SA2 [QYLP]
118280
118353
+
Gly
GCC
[ENA]
¡û
>W1810167932
PJIW01000009
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
75497
75424
-
Gly
GCC
[ENA]
¡û
>W1810167935
PJIW01000009
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
75134
75061
-
Gly
GCC
[ENA]
¡û
>W1810171971
PJMB01000007
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
47233
47306
+
Gly
GCC
[ENA]
¡û
>W1810171974
PJMB01000007
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
47599
47672
+
Gly
GCC
[ENA]
¡û
>W1810242516
PPXB01000014
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
74577
74650
+
Gly
GCC
[ENA]
¡û
>W1810242564
PPXC01000008
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
128714
128641
-
Gly
GCC
[ENA]
¡û
>W1810569987
QEHL01000026
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
31608
31681
+
Gly
GCC
[ENA]
¡û
>W1810569990
QEHL01000026
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
31965
32038
+
Gly
GCC
[ENA]
¡û
>W1810676796
QKMG01000002
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
190655
190582
-
Gly
GCC
[ENA]
¡û
>W1810676800
QKMG01000002
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
190191
190118
-
Gly
GCC
[ENA]
¡û
>W1810676802
QKMG01000002
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
189963
189888
-
Gly
GCC
[ENA]
¡û
>W1810695551
QLNP01000067
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
83504
83431
-
Gly
GCC
[ENA]
¡û
>W1810695554
QLNP01000067
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
83146
83073
-
Gly
GCC
[ENA]
¡û
>W1810789439
QRGQ01000007
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
138848
138921
+
Gly
GCC
[ENA]
¡û
>W1810789442
QRGQ01000007
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
139205
139278
+
Gly
GCC
[ENA]
¡û
>W1510018517
BBUD01000665
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
3813
3886
+
Gly
GCC
[ENA]
¡û
>W1510018520
BBUD01000665
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
4185
4258
+
Gly
GCC
[ENA]
¡û
>W1510018522
BBUD01000665
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
4438
4513
+
Gly
GCC
[ENA]
¡û
>W1510641751
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
2356402
2356329
-
Gly
GCC
[ENA]
¡û
>W1510641754
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
2356041
2355968
-
Gly
GCC
[ENA]
¡û
>W1510641756
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
2355813
2355738
-
Gly
GCC
[ENA]
¡û
>W1511523723
JYCN01000015
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
187423
187350
-
Gly
GCC
[ENA]
¡û
>W1511523726
JYCN01000015
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
187062
186989
-
Gly
GCC
[ENA]
¡û
>W1511685664
LFQH01000012
Actinomycetota
Arthrobacter sp. ZBG10 [LFQH]
36813
36740
-
Gly
GCC
[ENA]
¡û
>W1511685667
LFQH01000012
Actinomycetota
Arthrobacter sp. ZBG10 [LFQH]
36450
36377
-
Gly
GCC
[ENA]
¡û
>C161060712
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
465542
465615
+
Gly
GCC
[Ensembl]
¡û
>C161060715
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
465905
465978
+
Gly
GCC
[Ensembl]
¡û
>W121086808
AKKK01000018
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
70538
70463
-
Gly
GCC
[ENA]
¡û
>W121086832
AKKK01000059
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
2190
2263
+
Gly
GCC
[ENA]
¡û
>W121086835
AKKK01000059
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
2551
2624
+
Gly
GCC
[ENA]
¡û
>W121123808
BAEG01000051
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
14431
14504
+
Gly
GCC
[ENA]
¡û
>W121123811
BAEG01000051
Actinomycetota
Arthrobacter globiformis NBRC 12137 [BAEG]
14792
14865
+
Gly
GCC
[ENA]
¡û
>W1610515421
FMAZ01000002
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
175193
175120
-
Gly
GCC
[ENA]
¡û
>W1610515424
FMAZ01000002
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
174837
174764
-
Gly
GCC
[ENA]
¡û
>W1610527149
JPWK01000037
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
122307
122234
-
Gly
GCC
[ENA]
¡û
>W1610527152
JPWK01000037
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
121950
121877
-
Gly
GCC
[ENA]
¡û
>W1610527154
JPWK01000037
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
121722
121647
-
Gly
GCC
[ENA]
¡û
>W1610738638
LMPC01000012
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
787039
786966
-
Gly
GCC
[ENA]
¡û
>W1610738641
LMPC01000012
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
786678
786605
-
Gly
GCC
[ENA]
¡û
>W1610742753
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
82662
82589
-
Gly
GCC
[ENA]
¡û
>W1610742756
LMSI01000019
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
82307
82234
-
Gly
GCC
[ENA]
¡û
>W1610767798
LNQM01000002
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
175193
175120
-
Gly
GCC
[ENA]
¡û
>W1610767801
LNQM01000002
Actinomycetota
Pseudarthrobacter enclensis [LNQM]
174837
174764
-
Gly
GCC
[ENA]
¡û
>W1610774337
LNUT01000004
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
1299484
1299411
-
Gly
GCC
[ENA]
¡û
>W1610774340
LNUT01000004
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
1299126
1299053
-
Gly
GCC
[ENA]
¡û
>W1610774427
LNUV01000001
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
419801
419874
+
Gly
GCC
[ENA]
¡û
>W1610774430
LNUV01000001
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
420162
420235
+
Gly
GCC
[ENA]
¡û
>W1610774432
LNUV01000001
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
420390
420465
+
Gly
GCC
[ENA]
¡û
>W1610989965
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2044234
2044161
-
Gly
GCC
[ENA]
¡û
>W1610989968
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2043868
2043795
-
Gly
GCC
[ENA]
¡û
>W1710501111
FMAZ01000002
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
175193
175120
-
Gly
GCC
[ENA]
¡û
>W1710501114
FMAZ01000002
Actinomycetota
Pseudarthrobacter enclensis [FMAZ]
174837
174764
-
Gly
GCC
[ENA]
¡û
>W1710521135
FNGD01000009
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
98524
98597
+
Gly
GCC
[ENA]
¡û
>W1710521138
FNGD01000009
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
98884
98957
+
Gly
GCC
[ENA]
¡û
>W1710541464
FNYI01000011
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
38728
38801
+
Gly
GCC
[ENA]
¡û
>W1710541467
FNYI01000011
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
39089
39162
+
Gly
GCC
[ENA]
¡û
>W1710541469
FNYI01000011
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
39317
39392
+
Gly
GCC
[ENA]
¡û
>W1710577642
FPAY01000010
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
13962
14035
+
Gly
GCC
[ENA]
¡û
>W1710577645
FPAY01000010
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
14324
14397
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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