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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247747 (120 seq.)
>W1711345249
MCNR01000010
Bacillota
Ligilactobacillus animalis [MCNR]
3861
3789
-
Thr
GGT
[ENA]
¡û
>W1711632541
MPSN01000013
Bacillota
Ligilactobacillus murinus [MPSN]
4813
4741
-
Thr
GGT
[ENA]
¡û
>W1711683673
MRYO01000041
Bacillota
Ligilactobacillus ruminis [MRYO]
7776
7848
+
Thr
GGT
[ENA]
¡û
>W1711683748
MRYP01000040
Bacillota
Ligilactobacillus ruminis [MRYP]
11032
11104
+
Thr
GGT
[ENA]
¡û
>W1711683790
MRYQ01000026
Bacillota
Ligilactobacillus ruminis [MRYQ]
10487
10415
-
Thr
GGT
[ENA]
¡û
>W1711943756
NBEE01000007
Bacillota
Ligilactobacillus salivarius [NBEE]
42332
42259
-
Thr
GGT
[ENA]
¡û
>W131144845
AQFS01000021
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
13817
13889
+
Thr
GGT
[ENA]
¡û
>W131230429
AUHP01000011
Bacillota
Ligilactobacillus ceti DSM 22408 [AUHP]
327194
327266
+
Thr
GGT
[ENA]
¡û
>WENV181236761
OFEZ01009087
[OFEZ] mouse gut metagenome; faeces
1934
2006
+
Thr
GGT
[ENA]
¢þ
>WENV181239534
OFFD01001465
[OFFD] mouse gut metagenome; faeces
1552
1480
-
Thr
GGT
[ENA]
¢þ
>WENV181240704
OFFE01005502
[OFFE] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181241767
OFFF01006159
[OFFF] mouse gut metagenome; faeces
1694
1622
-
Thr
GGT
[ENA]
¢þ
>WENV181242912
OFFG01006897
[OFFG] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181244971
OFFI01005457
[OFFI] mouse gut metagenome; faeces
659
587
-
Thr
GGT
[ENA]
¢þ
>WENV181246017
OFFJ01006489
[OFFJ] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181246889
OFFK01001717
[OFFK] mouse gut metagenome; faeces
12435
12507
+
Thr
GGT
[ENA]
¢þ
>WENV181250548
OFFN01023532
[OFFN] mouse gut metagenome; faeces
658
730
+
Thr
GGT
[ENA]
¢þ
>WENV181251555
OFFO01028159
[OFFO] mouse gut metagenome; faeces
756
828
+
Thr
GGT
[ENA]
¢þ
>WENV181252006
OFFP01001905
[OFFP] mouse gut metagenome; faeces
12435
12507
+
Thr
GGT
[ENA]
¢þ
>WENV181254169
OFFR01000933
[OFFR] mouse gut metagenome; faeces
12435
12507
+
Thr
GGT
[ENA]
¢þ
>WENV181255282
OFFS01001087
[OFFS] mouse gut metagenome; faeces
12435
12507
+
Thr
GGT
[ENA]
¢þ
>WENV181256464
OFFT01005172
[OFFT] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181257752
OFFU01004647
[OFFU] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181258872
OFFV01004269
[OFFV] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181259714
OFFW01001669
[OFFW] mouse gut metagenome; faeces
12656
12728
+
Thr
GGT
[ENA]
¢þ
>WENV181261189
OFFX01008908
[OFFX] mouse gut metagenome; faeces
406
334
-
Thr
GGT
[ENA]
¢þ
>WENV181262554
OFFY01008543
[OFFY] mouse gut metagenome; faeces
660
588
-
Thr
GGT
[ENA]
¢þ
>WENV181263610
OFFZ01006507
[OFFZ] mouse gut metagenome; faeces
645
573
-
Thr
GGT
[ENA]
¢þ
>WENV181264763
OFGA01006953
[OFGA] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181265800
OFGB01001674
[OFGB] mouse gut metagenome; faeces
667
595
-
Thr
GGT
[ENA]
¢þ
>WENV181268335
OFGD01004067
[OFGD] mouse gut metagenome; faeces
1921
1849
-
Thr
GGT
[ENA]
¢þ
>WENV181269785
OFGE01007277
[OFGE] mouse gut metagenome; faeces
1694
1622
-
Thr
GGT
[ENA]
¢þ
>WENV181271040
OFGF01005127
[OFGF] mouse gut metagenome; faeces
1694
1622
-
Thr
GGT
[ENA]
¢þ
>WENV181272038
OFGG01001588
[OFGG] mouse gut metagenome; faeces
12435
12507
+
Thr
GGT
[ENA]
¢þ
>WENV181273644
OFGH01005338
[OFGH] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181276432
OFGK01004148
[OFGK] mouse gut metagenome; faeces
1063
991
-
Thr
GGT
[ENA]
¢þ
>WENV181277495
OFGL01003910
[OFGL] mouse gut metagenome; faeces
2034
1962
-
Thr
GGT
[ENA]
¢þ
>WENV181278572
OFGM01003930
[OFGM] mouse gut metagenome; faeces
3574
3646
+
Thr
GGT
[ENA]
¢þ
>WENV181279653
OFGN01001873
[OFGN] mouse gut metagenome; faeces
640
568
-
Thr
GGT
[ENA]
¢þ
>WENV181281006
OFGO01005029
[OFGO] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181282304
OFGP01007250
[OFGP] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181283532
OFGQ01005748
[OFGQ] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181284767
OFGR01006585
[OFGR] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181287429
OFGX01005756
[OFGX] mouse gut metagenome; faeces
1694
1622
-
Thr
GGT
[ENA]
¢þ
>WENV181290024
OFHA01005847
[OFHA] mouse gut metagenome; faeces
1911
1839
-
Thr
GGT
[ENA]
¢þ
>WENV181299350
OFHM01006270
[OFHM] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181300811
OFHN01008140
[OFHN] mouse gut metagenome; faeces
640
568
-
Thr
GGT
[ENA]
¢þ
>WENV181302244
OFHO01008144
[OFHO] mouse gut metagenome; faeces
3570
3642
+
Thr
GGT
[ENA]
¢þ
>WENV181303274
OFHP01004075
[OFHP] mouse gut metagenome; faeces
3572
3644
+
Thr
GGT
[ENA]
¢þ
>WENV181356362
OFMU01000007
[OFMU] human gut metagenome; human gut
267838
267910
+
Thr
GGT
[ENA]
¢þ
>WENV181473425
OGFB01003990
[OGFB] metagenome; Human gut stool
1534
1462
-
Thr
GGT
[ENA]
¢þ
>WENV181684342
OGOV01007558
[OGOV] human gut metagenome; faeces
4810
4882
+
Thr
GGT
[ENA]
¢þ
>WENV182274073
OHUJ01032148
[OHUJ] human gut metagenome; feces
225
297
+
Thr
GGT
[ENA]
¢þ
>W141227575
BALC01000008
Bacillota
Liquorilactobacillus sucicola JCM 15457 [BALC]
1671
1599
-
Thr
GGT
[ENA]
¡û
>W141229186
BAMM01000001
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
1099
1027
-
Thr
GGT
[ENA]
¡û
>WENV183284350
OLSD01014125
[OLSD] human gut metagenome; faeces
740
668
-
Thr
GGT
[ENA]
¢þ
>WENV183553024
OOBK01000239
[OOBK] human gut metagenome; human gut
1769
1697
-
Thr
GGT
[ENA]
¢þ
>WENV183788837
PPYF01370672
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3710
3638
-
Thr
GGT
[ENA]
¢þ
>C181084770
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
123653
123581
-
Thr
GGT
-
¡û
>C181084825
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
2211864
2211936
+
Thr
GGT
-
¡û
>C191015335
CP018176
Bacillota
Liquorilactobacillus hordei TMW 1.1822 [CP018176]
500846
500774
-
Thr
GGT
-
¡û
>C191172107
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
1630448
1630520
+
Thr
GGT
-
¡û
>W141699147
JMHU01000004
Bacillota
Ligilactobacillus animalis [JMHU]
216799
216871
+
Thr
GGT
[ENA]
¡û
>W1910611642
LFJL01000038
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
3234
3162
-
Thr
GGT
[ENA]
¡û
>W1910611654
LFJM01000014
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
3234
3162
-
Thr
GGT
[ENA]
¡û
>W1911754039
QWMU01000027
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
18778
18850
+
Thr
GGT
[ENA]
¡û
>W1911814448
QZFR01000041
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
18776
18848
+
Thr
GGT
[ENA]
¡û
>W1810225255
POVP01000003
Bacillota
Ligilactobacillus animalis NP51 [POVP]
312953
313025
+
Thr
GGT
[ENA]
¡û
>W1511007726
JHAB01000034
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
95717
95789
+
Thr
GGT
[ENA]
¡û
>W1511008070
JHAJ01000023
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
3131
3059
-
Thr
GGT
[ENA]
¡û
>W11141802
AEOF01000026
Bacillota
Ligilactobacillus animalis KCTC 3501 [AEOF]
41912
41984
+
Thr
GGT
[ENA]
¡û
>W11184915
BACP01000068
Bacillota
Liquorilactobacillus mali KCTC 3596 [BACP]
1050
978
-
Thr
GGT
[ENA]
¡û
>C121004262
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
464382
464310
-
Thr
GGT
[Ensembl]
¡û
>W1610029394
AWYA01000027
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
9805
9733
-
Thr
GGT
[ENA]
¡û
>W1610030802
AYYH01000016
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AYYH]
1075
1003
-
Thr
GGT
[ENA]
¡û
>W1610030992
AYYL01000066
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
91
19
-
Thr
GGT
[ENA]
¡û
>W1610031098
AYYN01000167
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
57373
57445
+
Thr
GGT
[ENA]
¡û
>W1610031533
AYYW01000039
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
3697
3625
-
Thr
GGT
[ENA]
¡û
>W1610031563
AYYX01000078
Bacillota
Liquorilactobacillus vini DSM 20605 [AYYX]
1595
1523
-
Thr
GGT
[ENA]
¡û
>W1610031820
AYZD01000016
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
1514
1442
-
Thr
GGT
[ENA]
¡û
>W1610031931
AYZF01000007
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
1727
1655
-
Thr
GGT
[ENA]
¡û
>W1610034664
AZDX01000071
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
988
916
-
Thr
GGT
[ENA]
¡û
>W1610035074
AZEF01000020
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
1343
1271
-
Thr
GGT
[ENA]
¡û
>W1610035117
AZEG01000009
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
1197
1125
-
Thr
GGT
[ENA]
¡û
>W1610035157
AZEH01000014
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
2905
2833
-
Thr
GGT
[ENA]
¡û
>W1610035850
AZEV01000008
Bacillota
Liquorilactobacillus nagelii DSM 13675 [AZEV]
1142
1069
-
Thr
GGT
[ENA]
¡û
>W1610036864
AZFQ01000016
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
77525
77597
+
Thr
GGT
[ENA]
¡û
>W1610037078
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
1154
1082
-
Thr
GGT
[ENA]
¡û
>W1610037468
AZGB01000016
Bacillota
Liquorilactobacillus ghanensis DSM 18630 [AZGB]
1393
1320
-
Thr
GGT
[ENA]
¡û
>W1610046706
BBCQ01000052
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
2665
2593
-
Thr
GGT
[ENA]
¡û
>W1610072838
BCVJ01000049
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
1190
1118
-
Thr
GGT
[ENA]
¡û
>W1610073261
BCVU01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
74
2
-
Thr
GGT
[ENA]
¡û
>W121043974
AHYZ01000046
Bacillota
Liquorilactobacillus vini DSM 20605 [AHYZ]
9953
10025
+
Thr
GGT
[ENA]
¡û
>W121044036
AHZA01000218
Bacillota
Liquorilactobacillus vini JP7.8.9 [AHZA]
5431
5503
+
Thr
GGT
[ENA]
¡û
>W121086981
AKKT01000009
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AKKT]
1074
1002
-
Thr
GGT
[ENA]
¡û
>W1610527808
JQAR01000025
Bacillota
Liquorilactobacillus mali [JQAR]
33299
33371
+
Thr
GGT
[ENA]
¡û
>W1610529320
JQBZ01000025
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
808097
808169
+
Thr
GGT
[ENA]
¡û
>W1710026764
AWYA01000027
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
9805
9733
-
Thr
GGT
[ENA]
¡û
>W1710027754
AYYH01000016
Bacillota
Liquorilactobacillus mali KCTC 3596 = DSM 20444 [AYYH]
1075
1003
-
Thr
GGT
[ENA]
¡û
>W1710027944
AYYL01000066
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
91
19
-
Thr
GGT
[ENA]
¡û
>W1710028050
AYYN01000167
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
57373
57445
+
Thr
GGT
[ENA]
¡û
>W1710028460
AYYW01000039
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
3697
3625
-
Thr
GGT
[ENA]
¡û
>W1710028490
AYYX01000078
Bacillota
Liquorilactobacillus vini DSM 20605 [AYYX]
1595
1523
-
Thr
GGT
[ENA]
¡û
>W1710028747
AYZD01000016
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
1514
1442
-
Thr
GGT
[ENA]
¡û
>W1710028858
AYZF01000007
Bacillota
Liquorilactobacillus sucicola DSM 21376 = JCM 15457 [AYZF]
1727
1655
-
Thr
GGT
[ENA]
¡û
>W1710031791
AZDX01000071
Bacillota
Liquorilactobacillus hordei DSM 19519 [AZDX]
988
916
-
Thr
GGT
[ENA]
¡û
>W1710032201
AZEF01000020
Bacillota
Liquorilactobacillus capillatus DSM 19910 [AZEF]
1343
1271
-
Thr
GGT
[ENA]
¡û
>W1710032244
AZEG01000009
Bacillota
Liquorilactobacillus uvarum DSM 19971 [AZEG]
1197
1125
-
Thr
GGT
[ENA]
¡û
>W1710032284
AZEH01000014
Bacillota
Liquorilactobacillus oeni DSM 19972 [AZEH]
2905
2833
-
Thr
GGT
[ENA]
¡û
>W1710032889
AZEV01000008
Bacillota
Liquorilactobacillus nagelii DSM 13675 [AZEV]
1142
1069
-
Thr
GGT
[ENA]
¡û
>W1710033903
AZFQ01000016
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [AZFQ]
77525
77597
+
Thr
GGT
[ENA]
¡û
>W1710034117
AZFT01000053
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
1154
1082
-
Thr
GGT
[ENA]
¡û
>W1710034507
AZGB01000016
Bacillota
Liquorilactobacillus ghanensis DSM 18630 [AZGB]
1393
1320
-
Thr
GGT
[ENA]
¡û
>W1710043449
BBCQ01000052
Bacillota
Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 [BBCQ]
2665
2593
-
Thr
GGT
[ENA]
¡û
>W1710069956
BCVJ01000049
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
1190
1118
-
Thr
GGT
[ENA]
¡û
>W1710070379
BCVU01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [BCVU]
74
2
-
Thr
GGT
[ENA]
¡û
>W1710081630
BDFM01000274
Bacillota
Ligilactobacillus murinus [BDFM]
914
842
-
Thr
GGT
[ENA]
¡û
>W1710563006
FOPI01000045
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
3362
3290
-
Thr
GGT
[ENA]
¡û
>W1710629439
JQAR01000025
Bacillota
Liquorilactobacillus mali [JQAR]
33299
33371
+
Thr
GGT
[ENA]
¡û
>W1710630910
JQBZ01000025
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
808097
808169
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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