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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24777 (125 seq.)
>W131222666
AUBL01000039
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
37950
37860
-
Ser
GCT
[ENA]
¡û
>W1711724119
MTPX01000022
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
2771
2860
+
Ser
GCT
[ENA]
¡û
>W131222772
AUBN01000019
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
37588
37501
-
Ser
GCT
[ENA]
¡û
>WENV180137332
OATO01007710
[OATO] human gut metagenome; faeces
92
4
-
Ser
GCT
[ENA]
¢þ
>WENV180190713
OAXA01000435
[OAXA] human gut metagenome; faeces
1471
1559
+
Ser
GCT
[ENA]
¢þ
>WENV180410834
OBUX01010815
[OBUX] human gut metagenome; faeces
133
45
-
Ser
GCT
[ENA]
¢þ
>WENV180421011
OBVP01002208
[OBVP] human gut metagenome; faeces
204
116
-
Ser
GCT
[ENA]
¢þ
>WENV180428051
OBWB01003722
[OBWB] human gut metagenome; faeces
326
414
+
Ser
GCT
[ENA]
¢þ
>WENV180492510
OBZW01022657
[OBZW] human gut metagenome; faeces
111
199
+
Ser
GCT
[ENA]
¢þ
>WENV180697614
ODDE01001764
[ODDE] human metagenome; G_DNA_Supragingival plaque
5640
5727
+
Ser
GCT
[ENA]
¢þ
>WENV180722040
ODGL01060942
[ODGL] human metagenome; G_DNA_Subgingival plaque
183
273
+
Ser
GCT
[ENA]
¢þ
>WENV180726262
ODGS01093307
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
81
168
+
Ser
GCT
[ENA]
¢þ
>WENV180728898
ODGU01118315
[ODGU] human metagenome; G_DNA_Supragingival plaque
91
182
+
Ser
GCT
[ENA]
¢þ
>WENV180733112
ODGY01026446
[ODGY] human metagenome; G_DNA_Supragingival plaque
89
2
-
Ser
GCT
[ENA]
¢þ
>WENV180734574
ODGZ01013278
[ODGZ] human metagenome; G_DNA_Supragingival plaque
739
826
+
Ser
GCT
[ENA]
¢þ
>WENV180736258
ODHB01014692
[ODHB] human metagenome; G_DNA_Supragingival plaque
1053
966
-
Ser
GCT
[ENA]
¢þ
>WENV180739215
ODHD01015786
[ODHD] human metagenome; G_DNA_Supragingival plaque
762
849
+
Ser
GCT
[ENA]
¢þ
>WENV180750568
ODHS01003782
[ODHS] human metagenome; G_DNA_Supragingival plaque
2393
2480
+
Ser
GCT
[ENA]
¢þ
>WENV180755262
ODHU01062143
[ODHU] human metagenome; G_DNA_Supragingival plaque
86
173
+
Ser
GCT
[ENA]
¢þ
>WENV180764571
ODIB01000051
[ODIB] human metagenome; G_DNA_Supragingival plaque
4087
4000
-
Ser
GCT
[ENA]
¢þ
>WENV180777447
ODIL01007048
[ODIL] human metagenome; G_DNA_Supragingival plaque
805
892
+
Ser
GCT
[ENA]
¢þ
>WENV180778804
ODIM01112477
[ODIM] human metagenome; G_DNA_Supragingival plaque
89
2
-
Ser
GCT
[ENA]
¢þ
>WENV180781975
ODIP01010741
[ODIP] human metagenome; G_DNA_Supragingival plaque
160
247
+
Ser
GCT
[ENA]
¢þ
>WENV180789348
ODIS01465842
[ODIS] human metagenome; G_DNA_Supragingival plaque
91
1
-
Ser
GCT
[ENA]
¢þ
>WENV180796783
ODJB01013699
[ODJB] human metagenome; G_DNA_Supragingival plaque
536
623
+
Ser
GCT
[ENA]
¢þ
>WENV180801194
ODJD01012540
[ODJD] human metagenome; G_DNA_Supragingival plaque
1692
1605
-
Ser
GCT
[ENA]
¢þ
>WENV180801216
ODJD01013857
[ODJD] human metagenome; G_DNA_Supragingival plaque
64
151
+
Ser
GCT
[ENA]
¢þ
>WENV180801544
ODJD01051323
[ODJD] human metagenome; G_DNA_Supragingival plaque
514
427
-
Ser
GCT
[ENA]
¢þ
>WENV180804445
ODJG01002970
[ODJG] human metagenome; G_DNA_Supragingival plaque
540
450
-
Ser
GCT
[ENA]
¢þ
>WENV180814388
ODJO01015325
[ODJO] human metagenome; G_DNA_Supragingival plaque
64
151
+
Ser
GCT
[ENA]
¢þ
>WENV180822250
ODJT01000133
[ODJT] human metagenome; G_DNA_Supragingival plaque
3947
3860
-
Ser
GCT
[ENA]
¢þ
>WENV180823656
ODJW01093817
[ODJW] human metagenome; G_DNA_Supragingival plaque
60
150
+
Ser
GCT
[ENA]
¢þ
>WENV180833147
ODKC01017399
[ODKC] human metagenome; G_DNA_Supragingival plaque
1476
1389
-
Ser
GCT
[ENA]
¢þ
>WENV180834304
ODKD01010404
[ODKD] human metagenome; G_DNA_Supragingival plaque
1435
1348
-
Ser
GCT
[ENA]
¢þ
>WENV180836003
ODKE01028237
[ODKE] human metagenome; G_DNA_Supragingival plaque
2
89
+
Ser
GCT
[ENA]
¢þ
>WENV180842624
ODKM01088914
[ODKM] human metagenome; G_DNA_Buccal mucosa
103
190
+
Ser
GCT
[ENA]
¢þ
>WENV180844549
ODKN01184952
[ODKN] human metagenome; G_DNA_Supragingival plaque
184
271
+
Ser
GCT
[ENA]
¢þ
>WENV180846490
ODKT01012292
[ODKT] human metagenome; G_DNA_Supragingival plaque
1600
1687
+
Ser
GCT
[ENA]
¢þ
>WENV180881683
ODMA01036531
[ODMA] human metagenome; G_DNA_Supragingival plaque
197
284
+
Ser
GCT
[ENA]
¢þ
>WENV180888367
ODMN01000639
[ODMN] human metagenome; G_DNA_Supragingival plaque
20240
20153
-
Ser
GCT
[ENA]
¢þ
>WENV180888872
ODMN01005078
[ODMN] human metagenome; G_DNA_Supragingival plaque
1740
1653
-
Ser
GCT
[ENA]
¢þ
>WENV180889369
ODMN01035278
[ODMN] human metagenome; G_DNA_Supragingival plaque
72
159
+
Ser
GCT
[ENA]
¢þ
>WENV180925204
ODTK01056243
[ODTK] human metagenome; G_DNA_Supragingival plaque
64
151
+
Ser
GCT
[ENA]
¢þ
>WENV180928409
ODTM01046088
[ODTM] human metagenome; G_DNA_Supragingival plaque
178
265
+
Ser
GCT
[ENA]
¢þ
>WENV180933905
ODTR01005622
[ODTR] human metagenome; G_DNA_Supragingival plaque
2489
2576
+
Ser
GCT
[ENA]
¢þ
>WENV180934846
ODTS01004786
[ODTS] human metagenome; G_DNA_Subgingival plaque
2490
2577
+
Ser
GCT
[ENA]
¢þ
>WENV180943920
ODUC01004271
[ODUC] human metagenome; G_DNA_Supragingival plaque
1668
1581
-
Ser
GCT
[ENA]
¢þ
>WENV180944164
ODUC01009383
[ODUC] human metagenome; G_DNA_Supragingival plaque
1561
1474
-
Ser
GCT
[ENA]
¢þ
>WENV180944864
ODUC01042648
[ODUC] human metagenome; G_DNA_Supragingival plaque
1297
1207
-
Ser
GCT
[ENA]
¢þ
>WENV180945326
ODUC01115705
[ODUC] human metagenome; G_DNA_Supragingival plaque
491
400
-
Ser
GCT
[ENA]
¢þ
>WENV180958571
ODUL01010105
[ODUL] human metagenome; G_DNA_Supragingival plaque
1624
1537
-
Ser
GCT
[ENA]
¢þ
>WENV180964479
ODUO01003282
[ODUO] human metagenome; G_DNA_Supragingival plaque
1030
1117
+
Ser
GCT
[ENA]
¢þ
>WENV180964519
ODUO01003859
[ODUO] human metagenome; G_DNA_Supragingival plaque
443
530
+
Ser
GCT
[ENA]
¢þ
>WENV180974015
ODUW01041998
[ODUW] human metagenome; G_DNA_Supragingival plaque
89
2
-
Ser
GCT
[ENA]
¢þ
>WENV180976563
ODUY01146761
[ODUY] human metagenome; G_DNA_Supragingival plaque
80
171
+
Ser
GCT
[ENA]
¢þ
>WENV180981466
ODVE01024485
[ODVE] human metagenome; G_DNA_Supragingival plaque
89
2
-
Ser
GCT
[ENA]
¢þ
>WENV180983417
ODVF01010812
[ODVF] human metagenome; G_DNA_Supragingival plaque
2506
2596
+
Ser
GCT
[ENA]
¢þ
>WENV180986980
ODVK01002846
[ODVK] human metagenome; G_DNA_Supragingival plaque
5016
5103
+
Ser
GCT
[ENA]
¢þ
>WENV181004247
ODVX01183767
[ODVX] human metagenome; G_DNA_Supragingival plaque
129
216
+
Ser
GCT
[ENA]
¢þ
>WENV181008340
ODWE01004135
[ODWE] human metagenome; G_DNA_Supragingival plaque
5222
5309
+
Ser
GCT
[ENA]
¢þ
>WENV181012714
ODWK01009304
[ODWK] human metagenome; G_DNA_Supragingival plaque
686
773
+
Ser
GCT
[ENA]
¢þ
>WENV181019852
ODWU01019256
[ODWU] human metagenome; G_DNA_Supragingival plaque
41
128
+
Ser
GCT
[ENA]
¢þ
>WENV181029902
ODXF01008695
[ODXF] human metagenome; G_DNA_Supragingival plaque
334
247
-
Ser
GCT
[ENA]
¢þ
>WENV181029965
ODXF01014133
[ODXF] human metagenome; G_DNA_Supragingival plaque
727
814
+
Ser
GCT
[ENA]
¢þ
>WENV181029997
ODXF01016134
[ODXF] human metagenome; G_DNA_Supragingival plaque
1012
1099
+
Ser
GCT
[ENA]
¢þ
>WENV181050325
ODYD01013453
[ODYD] human metagenome; G_DNA_Supragingival plaque
89
2
-
Ser
GCT
[ENA]
¢þ
>WENV181063335
ODYP01000442
[ODYP] human metagenome; G_DNA_Supragingival plaque
2083
2170
+
Ser
GCT
[ENA]
¢þ
>WENV181063920
ODYP01005395
[ODYP] human metagenome; G_DNA_Supragingival plaque
4456
4547
+
Ser
GCT
[ENA]
¢þ
>WENV181067488
ODZI01021181
[ODZI] human metagenome; G_DNA_Supragingival plaque
1687
1600
-
Ser
GCT
[ENA]
¢þ
>WENV181067987
ODZI01090458
[ODZI] human metagenome; G_DNA_Supragingival plaque
58
149
+
Ser
GCT
[ENA]
¢þ
>WENV181070779
OEAE01009677
[OEAE] human metagenome; G_DNA_Supragingival plaque
352
439
+
Ser
GCT
[ENA]
¢þ
>WENV181077117
OEAP01026387
[OEAP] human metagenome; G_DNA_Supragingival plaque
176
263
+
Ser
GCT
[ENA]
¢þ
>WENV181083703
OEAV01018488
[OEAV] human metagenome; G_DNA_Supragingival plaque
164
251
+
Ser
GCT
[ENA]
¢þ
>WENV181091268
OEBC01021327
[OEBC] human metagenome; G_DNA_Supragingival plaque
188
275
+
Ser
GCT
[ENA]
¢þ
>WENV181107167
OEEI01002760
[OEEI] human metagenome; G_DNA_Supragingival plaque
1528
1441
-
Ser
GCT
[ENA]
¢þ
>WENV181121987
OEFL01041764
[OEFL] human metagenome; G_DNA_Supragingival plaque
150
237
+
Ser
GCT
[ENA]
¢þ
>WENV181130782
OEFY01068651
[OEFY] human metagenome; G_DNA_Throat
39
129
+
Ser
GCT
[ENA]
¢þ
>WENV181137781
OEGJ01024407
[OEGJ] human metagenome; G_DNA_Supragingival plaque
208
295
+
Ser
GCT
[ENA]
¢þ
>WENV181144159
OEHM01132850
[OEHM] human metagenome; G_DNA_Supragingival plaque
76
163
+
Ser
GCT
[ENA]
¢þ
>WENV181146350
OEHQ01003563
[OEHQ] human metagenome; G_DNA_Supragingival plaque
93
6
-
Ser
GCT
[ENA]
¢þ
>WENV181152397
OEIA01001231
[OEIA] human metagenome; G_DNA_Supragingival plaque
5161
5248
+
Ser
GCT
[ENA]
¢þ
>WENV181156397
OEIE01013458
[OEIE] human metagenome; G_DNA_Supragingival plaque
1527
1440
-
Ser
GCT
[ENA]
¢þ
>WENV181158923
OEIH01017845
[OEIH] human metagenome; G_DNA_Supragingival plaque
139
226
+
Ser
GCT
[ENA]
¢þ
>WENV181161058
OEIK01112774
[OEIK] human metagenome; G_DNA_Supragingival plaque
271
184
-
Ser
GCT
[ENA]
¢þ
>WENV181178192
OEJS01085931
[OEJS] human metagenome; G_DNA_Supragingival plaque
171
81
-
Ser
GCT
[ENA]
¢þ
>WENV181179943
OEJT01034243
[OEJT] human metagenome; G_DNA_Supragingival plaque
345
432
+
Ser
GCT
[ENA]
¢þ
>WENV181181071
OEJU01004699
[OEJU] human metagenome; G_DNA_Supragingival plaque
3674
3587
-
Ser
GCT
[ENA]
¢þ
>WENV181182145
OEJV01003005
[OEJV] human metagenome; G_DNA_Supragingival plaque
3679
3592
-
Ser
GCT
[ENA]
¢þ
>WENV181187289
OENY01001091
[OENY] human gut metagenome; human gut
2257
2169
-
Ser
GCT
[ENA]
¢þ
>W141206198
AZLV01000959
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
296
385
+
Ser
GCT
[ENA]
¡û
>WENV182814979
OJYO01000115
[OJYO] human gut metagenome; human gut
16520
16608
+
Ser
GCT
[ENA]
¢þ
>WENV182815326
OJYQ01001438
[OJYQ] human gut metagenome; human gut
306
218
-
Ser
GCT
[ENA]
¢þ
>WENV182822900
OKBP01000063
[OKBP] human gut metagenome; human gut
1240
1152
-
Ser
GCT
[ENA]
¢þ
>WENV182822999
OKBQ01000264
[OKBQ] human gut metagenome; human gut
1455
1543
+
Ser
GCT
[ENA]
¢þ
>WENV182845936
OKJI01000002
[OKJI] human gut metagenome; human gut
28139
28051
-
Ser
GCT
[ENA]
¢þ
>WENV182846420
OKJM01000280
[OKJM] human gut metagenome; human gut
981
893
-
Ser
GCT
[ENA]
¢þ
>WENV182854346
OKMR01004437
[OKMR] human gut metagenome; human gut
113
201
+
Ser
GCT
[ENA]
¢þ
>WENV182854882
OKMX01000065
[OKMX] human gut metagenome; human gut
39213
39301
+
Ser
GCT
[ENA]
¢þ
>WENV182857529
OKNX01006130
[OKNX] human gut metagenome; human gut
514
602
+
Ser
GCT
[ENA]
¢þ
>WENV182961031
OKWK01000088
[OKWK] human gut metagenome; stool
47757
47845
+
Ser
GCT
[ENA]
¢þ
>WENV183510082
OMHL01007888
[OMHL] human oral metagenome; human oral
99
189
+
Ser
GCT
[ENA]
¢þ
>WENV183510630
OMHP01004791
[OMHP] human oral metagenome; human oral
544
454
-
Ser
GCT
[ENA]
¢þ
>WENV183510765
OMHQ01009737
[OMHQ] human oral metagenome; human oral
100
191
+
Ser
GCT
[ENA]
¢þ
>WENV183510981
OMHT01008849
[OMHT] human oral metagenome; human oral
74
164
+
Ser
GCT
[ENA]
¢þ
>WENV183511267
OMIB01008074
[OMIB] human oral metagenome; human oral
545
455
-
Ser
GCT
[ENA]
¢þ
>C181160785
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
298693
298782
+
Ser
GCT
-
¡û
>C191030364
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
282511
282600
+
Ser
GCT
-
¡û
>C191164709
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
270269
270358
+
Ser
GCT
-
¡û
>C191208278
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
1820401
1820312
-
Ser
GCT
-
¡û
>C191208634
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
2106799
2106710
-
Ser
GCT
-
¡û
>W1910281436
FQTT01000002
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
57233
57144
-
Ser
GCT
[ENA]
¡û
>W1810186632
PKHA01000013
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
5157
5069
-
Ser
GCT
[ENA]
¡û
>W1810238725
PPPL01000044
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
8575
8486
-
Ser
GCT
[ENA]
¡û
>W1810705167
QMIN01000110
Actinomycetota
Actinomyces sp. Z5 [QMIN]
34661
34750
+
Ser
GCT
[ENA]
¡û
>W1810705209
QMIO01000043
Actinomycetota
Actinomyces sp. Z3 [QMIO]
19662
19573
-
Ser
GCT
[ENA]
¡û
>C151095921
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
3726236
3726327
+
Ser
GCT
-
¡û
>W1511350875
JRMT01000001
Actinomycetota
Actinomyces urogenitalis S6-C4 [JRMT]
8586
8675
+
Ser
GCT
[ENA]
¡û
>W1511444675
JUUL01000009
Actinomycetota
Actinomyces urogenitalis 752_PACI [JUUL]
16143
16054
-
Ser
GCT
[ENA]
¡û
>W1511476059
JWEC01000985
Actinomycetota
Xylanimonas cellulosilytica 107_XCEL [JWEC]
92897
92986
+
Ser
GCT
[ENA]
¡û
>W11171058
AFQC01000018
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
40747
40834
+
Ser
GCT
[ENA]
¡û
>C161068952
CP014228
Actinomycetota
Actinomyces radicidentis CCUG 36733 [CP014228]
957179
957092
-
Ser
GCT
[Ensembl]
¡û
>W121081414
AKFT01000015
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
2066
2153
+
Ser
GCT
[ENA]
¡û
>W121084598
AKIO01000006
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
5919
5832
-
Ser
GCT
[ENA]
¡û
>W1710523239
FNHU01000008
Actinomycetota
Actinomyces ruminicola [FNHU]
120263
120174
-
Ser
GCT
[ENA]
¡û
>W1710524154
FNIM01000013
Actinomycetota
Actinomyces ruminicola [FNIM]
15277
15366
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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