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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247786 (121 seq.)
>W131053632
ANAG01000011
Bacillota
Ligilactobacillus saerimneri 30a [ANAG]
172966
172893
-
Thr
CGT
[ENA]
¡û
>W131144882
AQFS01000076
Bacillota
Ligilactobacillus murinus ASF361 [AQFS]
31379
31305
-
Thr
CGT
[ENA]
¡û
>W131230487
AUHQ01000045
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AUHQ]
575
648
+
Thr
CGT
[ENA]
¡û
>W1711345244
MCNR01000009
Bacillota
Ligilactobacillus animalis [MCNR]
695
767
+
Thr
CGT
[ENA]
¡û
>W1711485027
MKDI01000031
Bacillota
Latilactobacillus sakei [MKDI]
186
261
+
Thr
CGT
[ENA]
¡û
>W1711487546
MKGC01000043
Bacillota
Latilactobacillus curvatus [MKGC]
147
223
+
Thr
CGT
[ENA]
¡û
>W1711629118
MPOP01000111
Bacillota
Lacticaseibacillus casei [MPOP]
2597
2672
+
Thr
CGT
[ENA]
¡û
>W1711632494
MPSN01000001
Bacillota
Ligilactobacillus murinus [MPSN]
215357
215285
-
Thr
CGT
[ENA]
¡û
>W1711683664
MRYO01000013
Bacillota
Ligilactobacillus ruminis [MRYO]
54541
54464
-
Thr
CGT
[ENA]
¡û
>W1711683720
MRYP01000012
Bacillota
Ligilactobacillus ruminis [MRYP]
58268
58191
-
Thr
CGT
[ENA]
¡û
>W1711944698
NBEY01000051
Bacillota
Ligilactobacillus salivarius [NBEY]
49520
49446
-
Thr
CGT
[ENA]
¡û
>C171034612
CP014985
Bacillota
Lacticaseibacillus paracasei IIA [CP014985]
2980976
2981051
+
Thr
CGT
-
¡û
>C171129727
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
869441
869515
+
Thr
CGT
-
¡û
>WENV180319186
OBKN01000157
[OBKN] human gut metagenome; human gut
285
362
+
Thr
CGT
[ENA]
¢þ
>WENV181236675
OFEZ01004829
[OFEZ] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181239835
OFFD01011187
[OFFD] mouse gut metagenome; faeces
65
139
+
Thr
CGT
[ENA]
¢þ
>WENV181240881
OFFE01013184
[OFFE] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181241935
OFFF01013716
[OFFF] mouse gut metagenome; faeces
619
693
+
Thr
CGT
[ENA]
¢þ
>WENV181243045
OFFG01011609
[OFFG] mouse gut metagenome; faeces
731
805
+
Thr
CGT
[ENA]
¢þ
>WENV181244145
OFFH01016803
[OFFH] mouse gut metagenome; faeces
1787
1713
-
Thr
CGT
[ENA]
¢þ
>WENV181245097
OFFI01013491
[OFFI] mouse gut metagenome; faeces
62
136
+
Thr
CGT
[ENA]
¢þ
>WENV181246259
OFFJ01018894
[OFFJ] mouse gut metagenome; faeces
62
136
+
Thr
CGT
[ENA]
¢þ
>WENV181247349
OFFK01018358
[OFFK] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181252373
OFFP01014892
[OFFP] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181254497
OFFR01011829
[OFFR] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181255607
OFFS01009535
[OFFS] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181256616
OFFT01013589
[OFFT] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181257927
OFFU01012355
[OFFU] mouse gut metagenome; faeces
62
136
+
Thr
CGT
[ENA]
¢þ
>WENV181258998
OFFV01010362
[OFFV] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181260007
OFFW01009566
[OFFW] mouse gut metagenome; faeces
1614
1688
+
Thr
CGT
[ENA]
¢þ
>WENV181261258
OFFX01013370
[OFFX] mouse gut metagenome; faeces
655
729
+
Thr
CGT
[ENA]
¢þ
>WENV181262680
OFFY01015749
[OFFY] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181263805
OFFZ01017273
[OFFZ] mouse gut metagenome; faeces
192
266
+
Thr
CGT
[ENA]
¢þ
>WENV181265026
OFGA01018963
[OFGA] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181266146
OFGB01017123
[OFGB] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181268502
OFGD01013369
[OFGD] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181269979
OFGE01017033
[OFGE] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181271244
OFGF01013049
[OFGF] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181272469
OFGG01015234
[OFGG] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181273844
OFGH01011715
[OFGH] mouse gut metagenome; faeces
800
874
+
Thr
CGT
[ENA]
¢þ
>WENV181276560
OFGK01009109
[OFGK] mouse gut metagenome; faeces
327
401
+
Thr
CGT
[ENA]
¢þ
>WENV181278679
OFGM01007777
[OFGM] mouse gut metagenome; faeces
2101
2027
-
Thr
CGT
[ENA]
¢þ
>WENV181279911
OFGN01009658
[OFGN] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181281145
OFGO01012636
[OFGO] mouse gut metagenome; faeces
2100
2026
-
Thr
CGT
[ENA]
¢þ
>WENV181282453
OFGP01016076
[OFGP] mouse gut metagenome; faeces
62
136
+
Thr
CGT
[ENA]
¢þ
>WENV181283735
OFGQ01016088
[OFGQ] mouse gut metagenome; faeces
2100
2026
-
Thr
CGT
[ENA]
¢þ
>WENV181284976
OFGR01017771
[OFGR] mouse gut metagenome; faeces
230
304
+
Thr
CGT
[ENA]
¢þ
>WENV181287624
OFGX01016238
[OFGX] mouse gut metagenome; faeces
230
304
+
Thr
CGT
[ENA]
¢þ
>WENV181289271
OFGZ01029943
[OFGZ] mouse gut metagenome; faeces
166
240
+
Thr
CGT
[ENA]
¢þ
>WENV181290255
OFHA01016013
[OFHA] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181299615
OFHM01017903
[OFHM] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181300880
OFHN01011984
[OFHN] mouse gut metagenome; faeces
1013
1087
+
Thr
CGT
[ENA]
¢þ
>WENV181302392
OFHO01016985
[OFHO] mouse gut metagenome; faeces
230
304
+
Thr
CGT
[ENA]
¢þ
>WENV181303419
OFHP01012364
[OFHP] mouse gut metagenome; faeces
329
403
+
Thr
CGT
[ENA]
¢þ
>WENV181330139
OFLY01002136
[OFLY] human gut metagenome; human gut
10056
9979
-
Thr
CGT
[ENA]
¢þ
>WENV181355584
OFMT01003977
[OFMT] human gut metagenome; human gut
59
136
+
Thr
CGT
[ENA]
¢þ
>WENV181356566
OFMU01000217
[OFMU] human gut metagenome; human gut
66
138
+
Thr
CGT
[ENA]
¢þ
>WENV181538635
OGHY01031531
[OGHY] metagenome; Human gut stool
995
921
-
Thr
CGT
[ENA]
¢þ
>WENV181714714
OGPR01004499
[OGPR] human gut metagenome; faeces
326
403
+
Thr
CGT
[ENA]
¢þ
>WENV181786129
OGRN01000808
[OGRN] human gut metagenome; faeces
28702
28625
-
Thr
CGT
[ENA]
¢þ
>W141229193
BAMM01000018
Bacillota
Ligilactobacillus apodemi JCM 16172 [BAMM]
41138
41066
-
Thr
CGT
[ENA]
¡û
>WENV182362196
OICD01009333
[OICD] human gut metagenome; feces
2015
1938
-
Thr
CGT
[ENA]
¢þ
>WENV182376030
OIDD01002193
[OIDD] human gut metagenome; feces
6885
6808
-
Thr
CGT
[ENA]
¢þ
>WENV183284161
OLSD01006569
[OLSD] human gut metagenome; faeces
66
138
+
Thr
CGT
[ENA]
¢þ
>WENV183309490
OLUZ01000757
[OLUZ] human gut metagenome; faeces
685
613
-
Thr
CGT
[ENA]
¢þ
>WENV183511592
OMJG01000921
[OMJG] food metagenome; Cotija cheese
336
410
+
Thr
CGT
[ENA]
¢þ
>WENV183553140
OOBK01000733
[OOBK] human gut metagenome; human gut
20198
20121
-
Thr
CGT
[ENA]
¢þ
>WENV183789051
PPYF01374248
[PPYF] human gut metagenome; stool from patient with Crohn's disease
176
248
+
Thr
CGT
[ENA]
¢þ
>WENV183792364
PPYF01459306
[PPYF] human gut metagenome; stool from patient with Crohn's disease
70
144
+
Thr
CGT
[ENA]
¢þ
>C181084730
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
1408494
1408420
-
Thr
CGT
-
¡û
>C181084786
CP023566
Bacillota
Ligilactobacillus murinus CR141 [CP023566]
927023
927097
+
Thr
CGT
-
¡û
>W09123130
ACGS01000146
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
293
370
+
Thr
CGT
[ENA]
¡û
>C191035527
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1599197
1599122
-
Thr
CGT
-
¡û
>C191092845
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
1525936
1525863
-
Thr
CGT
-
¡û
>C191172068
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
415569
415641
+
Thr
CGT
-
¡û
>W141699154
JMHU01000011
Bacillota
Ligilactobacillus animalis [JMHU]
43389
43317
-
Thr
CGT
[ENA]
¡û
>W1910184447
BJOQ01000062
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
121
196
+
Thr
CGT
[ENA]
¡û
>W1910611600
LFJL01000014
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
43882
43810
-
Thr
CGT
[ENA]
¡û
>W1910611647
LFJM01000010
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
43881
43809
-
Thr
CGT
[ENA]
¡û
>W1910621426
LKFG01000041
Bacillota
Lacticaseibacillus paracasei FAM18108 [LKFG]
292106
292031
-
Thr
CGT
[ENA]
¡û
>W1910622999
LKGJ01000056
Bacillota
Lacticaseibacillus paracasei FAM6161 [LKGJ]
21881
21806
-
Thr
CGT
[ENA]
¡û
>W1910643049
LUGE01000058
Bacillota
Ligilactobacillus agilis UMNLA5 [LUGE]
599
671
+
Thr
CGT
[ENA]
¡û
>W1911161598
NPOB01000097
Bacillota
Lacticaseibacillus paracasei subsp. paracasei NTU 101 [NPOB]
9140
9065
-
Thr
CGT
[ENA]
¡û
>W1911569778
PCZA01000012
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
50874
50800
-
Thr
CGT
[ENA]
¡û
>W1911754060
QWMU01000144
Bacillota
Ligilactobacillus murinus 510-9 [QWMU]
167
241
+
Thr
CGT
[ENA]
¡û
>W1911814472
QZFR01000151
Bacillota
Ligilactobacillus murinus C-30 [QZFR]
247
321
+
Thr
CGT
[ENA]
¡û
>W1810225292
POVP01000010
Bacillota
Ligilactobacillus animalis NP51 [POVP]
174
246
+
Thr
CGT
[ENA]
¡û
>W1810473927
QAHU01000031
Bacillota
Lactobacillus sp. DS2_6 [QAHU]
1743
1818
+
Thr
CGT
[ENA]
¡û
>W1810706183
QMJW01000145
Bacillota
Lacticaseibacillus paracasei KMB_623 [QMJW]
2399
2474
+
Thr
CGT
[ENA]
¡û
>W1810834753
QSQR01000014
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
154
231
+
Thr
CGT
[ENA]
¡û
>W1511007755
JHAB01000077
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
327
404
+
Thr
CGT
[ENA]
¡û
>W1511008073
JHAJ01000084
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
157
234
+
Thr
CGT
[ENA]
¡û
>W1511505298
JXJQ01000009
Bacillota
Bombilactobacillus mellifer Bin4 [JXJQ]
139431
139357
-
Thr
CGT
[ENA]
¡û
>W11141788
AEOF01000015
Bacillota
Ligilactobacillus animalis KCTC 3501 [AEOF]
43242
43170
-
Thr
CGT
[ENA]
¡û
>W11168680
AFOJ01000009
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
230
307
+
Thr
CGT
[ENA]
¡û
>W11176957
AFYE01000001
Bacillota
Ligilactobacillus ruminis ATCC 25644 [AFYE]
186
263
+
Thr
CGT
[ENA]
¡û
>C121004212
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
399002
399079
+
Thr
CGT
[Ensembl]
¡û
>W1610029442
AWYA01000113
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
158
235
+
Thr
CGT
[ENA]
¡û
>W1610030979
AYYL01000029
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
34
111
+
Thr
CGT
[ENA]
¡û
>W1610031068
AYYN01000143
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
250
322
+
Thr
CGT
[ENA]
¡û
>W1610031505
AYYW01000010
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
43299
43227
-
Thr
CGT
[ENA]
¡û
>W1610032209
AYZL01000010
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
402
474
+
Thr
CGT
[ENA]
¡û
>W1610032926
AZCO01000027
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
25606
25531
-
Thr
CGT
[ENA]
¡û
>W1610036498
AZFI01000119
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
3032
3106
+
Thr
CGT
[ENA]
¡û
>W1610037037
AZFT01000040
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
43273
43201
-
Thr
CGT
[ENA]
¡û
>W1610044854
BBAW01000006
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
106276
106204
-
Thr
CGT
[ENA]
¡û
>W1610045553
BBBQ01000005
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
118
194
+
Thr
CGT
[ENA]
¡û
>W1610072831
BCVJ01000039
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
18926
18854
-
Thr
CGT
[ENA]
¡û
>W1710026812
AWYA01000113
Bacillota
Ligilactobacillus ruminis DPC 6832 [AWYA]
158
235
+
Thr
CGT
[ENA]
¡û
>W1710027931
AYYL01000029
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
34
111
+
Thr
CGT
[ENA]
¡û
>W1710028020
AYYN01000143
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
250
322
+
Thr
CGT
[ENA]
¡û
>W1710028432
AYYW01000010
Bacillota
Ligilactobacillus animalis KCTC 3501 = DSM 20602 [AYYW]
43299
43227
-
Thr
CGT
[ENA]
¡û
>W1710029136
AYZL01000010
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
402
474
+
Thr
CGT
[ENA]
¡û
>W1710030257
AZCO01000027
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
25606
25531
-
Thr
CGT
[ENA]
¡û
>W1710033537
AZFI01000119
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
3032
3106
+
Thr
CGT
[ENA]
¡û
>W1710034076
AZFT01000040
Bacillota
Ligilactobacillus apodemi DSM 16634 = JCM 16172 [AZFT]
43273
43201
-
Thr
CGT
[ENA]
¡û
>W1710041952
BBAW01000006
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
106276
106204
-
Thr
CGT
[ENA]
¡û
>W1710042394
BBBQ01000005
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
118
194
+
Thr
CGT
[ENA]
¡û
>W1710069949
BCVJ01000039
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [BCVJ]
18926
18854
-
Thr
CGT
[ENA]
¡û
>W1710081637
BDFM01000336
Bacillota
Ligilactobacillus murinus [BDFM]
37524
37450
-
Thr
CGT
[ENA]
¡û
>W1710562977
FOPI01000015
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
378
455
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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