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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248381 (49 seq.)
>WENV180197753
OBAB01011011
[OBAB] human gut metagenome; faeces
186
260
+
Pro
TGG
[ENA]
¢þ
>WENV180446603
OBXC01000389
[OBXC] human gut metagenome; faeces
24729
24805
+
Pro
TGG
[ENA]
¢þ
>WENV180446742
OBXC01000981
[OBXC] human gut metagenome; faeces
679
603
-
Pro
TGG
[ENA]
¢þ
>WENV180446747
OBXC01000981
[OBXC] human gut metagenome; faeces
169
93
-
Pro
TGG
[ENA]
¢þ
>WENV180446846
OBXC01001830
[OBXC] human gut metagenome; faeces
9250
9176
-
Pro
TGG
[ENA]
¢þ
>WENV180455078
OBXO01000355
[OBXO] human gut metagenome; faeces
30561
30485
-
Pro
TGG
[ENA]
¢þ
>WENV180455393
OBXO01002680
[OBXO] human gut metagenome; faeces
180
254
+
Pro
TGG
[ENA]
¢þ
>WENV180455602
OBXO01014500
[OBXO] human gut metagenome; faeces
393
469
+
Pro
TGG
[ENA]
¢þ
>WENV182409568
OIFJ01000017
[OIFJ] human gut metagenome; stool
79539
79615
+
Pro
TGG
[ENA]
¢þ
>WENV182409858
OIFJ01000908
[OIFJ] human gut metagenome; stool
108
182
+
Pro
TGG
[ENA]
¢þ
>WENV182480146
OIQW01002304
[OIQW] human gut metagenome; human gut
315
239
-
Pro
TGG
[ENA]
¢þ
>WENV182507666
OIVM01011122
[OIVM] human gut metagenome; human gut
558
483
-
Pro
TGG
[ENA]
¢þ
>WENV182961445
OKWL01000003
[OKWL] human gut metagenome; stool
1
77
+
Pro
TGG
[ENA]
¢þ
>WENV182961588
OKWL01000077
[OKWL] human gut metagenome; stool
121789
121865
+
Pro
TGG
[ENA]
¢þ
>WENV182962534
OKWN01002945
[OKWN] human gut metagenome; stool
628
552
-
Pro
TGG
[ENA]
¢þ
>WENV182965722
OKWT01000074
[OKWT] human gut metagenome; stool
77
1
-
Pro
TGG
[ENA]
¢þ
>WENV182965822
OKWT01000328
[OKWT] human gut metagenome; stool
9020
8944
-
Pro
TGG
[ENA]
¢þ
>WENV182976159
OKXY01014705
[OKXY] human gut metagenome; human gut
515
589
+
Pro
TGG
[ENA]
¢þ
>WENV183018885
OLFA01008706
[OLFA] human gut metagenome; human gut
447
373
-
Pro
TGG
[ENA]
¢þ
>WENV183500523
OMGQ01024989
[OMGQ] human gut metagenome; human gut
956
880
-
Pro
TGG
[ENA]
¢þ
>WENV183589949
OOCW01020592
[OOCW] human gut metagenome; human gut
1175
1249
+
Pro
TGG
[ENA]
¢þ
>WENV170785286
MDSP01007931
[MDSP] gut metagenome; Stomach gut content
1169
1245
+
Pro
TGG
[ENA]
¢þ
>WENV170785353
MDSP01025988
[MDSP] gut metagenome; Stomach gut content
1612
1687
+
Pro
TGG
[ENA]
¢þ
>WENV170785822
MDSQ01000481
[MDSQ] gut metagenome; Hindgut content
10237
10161
-
Pro
TGG
[ENA]
¢þ
>C191128885
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
830742
830816
+
Pro
TGG
-
¡û
>C191128927
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
2083866
2083940
+
Pro
TGG
-
¡û
>C191128958
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3923780
3923704
-
Pro
TGG
-
¡û
>W1910217651
FMMP01000006
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
625
699
+
Pro
TGG
[ENA]
¡û
>W1910217672
FMMP01000010
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
642
716
+
Pro
TGG
[ENA]
¡û
>W1910217727
FMMP01000028
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
267016
266940
-
Pro
TGG
[ENA]
¡û
>W1810071112
PEDL01000024
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
27653
27578
-
Pro
TGG
[ENA]
¡û
>W1810071137
PEDL01000048
Bacillota
Sporanaerobium hydrogeniformans XHS1971 [PEDL]
1145
1219
+
Pro
TGG
[ENA]
¡û
>W10118863
ADVF01000015
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
4935
5009
+
Pro
TGG
[ENA]
¡û
>W10118888
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
16787
16861
+
Pro
TGG
[ENA]
¡û
>W10118899
ADVF01000027
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
26887
26811
-
Pro
TGG
[ENA]
¡û
>C11105529
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
172997
173071
+
Pro
TGG
[Ensembl]
¡û
>C11105571
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1515368
1515442
+
Pro
TGG
[Ensembl]
¡û
>C11105604
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3215546
3215470
-
Pro
TGG
[Ensembl]
¡û
>W1510725230
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3388753
3388679
-
Pro
TGG
[ENA]
¡û
>W1510725236
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3223740
3223666
-
Pro
TGG
[ENA]
¡û
>W1510725241
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3223258
3223184
-
Pro
TGG
[ENA]
¡û
>W1510725286
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1570557
1570481
-
Pro
TGG
[ENA]
¡û
>W11125035
ADVF01000015
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
4935
5009
+
Pro
TGG
[ENA]
¡û
>W11125060
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
16787
16861
+
Pro
TGG
[ENA]
¡û
>W11125071
ADVF01000027
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
26887
26811
-
Pro
TGG
[ENA]
¡û
>W1610046349
BBCG01000119
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
483
408
-
Pro
TGG
[ENA]
¡û
>W1610046369
BBCG01000169
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
113
190
+
Pro
TGG
[ENA]
¡û
>W1710043145
BBCG01000119
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
483
408
-
Pro
TGG
[ENA]
¡û
>W1710043165
BBCG01000169
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
113
190
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK