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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.248774 (95 seq.)
>W1710836233
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
635579
635504
-
Cys
GCA
[ENA]
¡û
>W1710914136
LNTC01000016
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
12673
12598
-
Cys
GCA
[ENA]
¡û
>W1711055312
LRUQ01000095
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
36486
36561
+
Cys
GCA
[ENA]
¡û
>W1711055338
LRUR01000066
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
148307
148382
+
Cys
GCA
[ENA]
¡û
>W1711055357
LRUS01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
14474
14399
-
Cys
GCA
[ENA]
¡û
>W1711055392
LRUT01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
46198
46273
+
Cys
GCA
[ENA]
¡û
>W1711055425
LRUU01000083
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
147052
147127
+
Cys
GCA
[ENA]
¡û
>W1711055453
LRUV01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
76756
76681
-
Cys
GCA
[ENA]
¡û
>W1711055475
LRUW01000048
Campylobacterota
Aliarcobacter skirrowii [LRUW]
70196
70271
+
Cys
GCA
[ENA]
¡û
>W1711055507
LRUX01000034
Campylobacterota
Aliarcobacter skirrowii [LRUX]
68847
68772
-
Cys
GCA
[ENA]
¡û
>W1711055543
LRUY01000083
Campylobacterota
Aliarcobacter skirrowii [LRUY]
54881
54956
+
Cys
GCA
[ENA]
¡û
>W1711484294
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
604
529
-
Cys
GCA
[ENA]
¡û
>W1711484297
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
78
3
-
Cys
GCA
[ENA]
¡û
>C171088959
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2684761
2684686
-
Cys
GCA
-
¡û
>C171088990
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1210795
1210720
-
Cys
GCA
-
¡û
>WENV180042422
LQAE01018177
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
190
265
+
Cys
GCA
[ENA]
¢þ
>WENV180043324
LQAH01028934
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
204
129
-
Cys
GCA
[ENA]
¢þ
>WENV180043720
LQAI01011857
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
514
589
+
Cys
GCA
[ENA]
¢þ
>WENV180044078
LQAJ01001967
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
41
116
+
Cys
GCA
[ENA]
¢þ
>WENV180283784
OBID01003072
[OBID] metagenome; sludge
233
308
+
Cys
GCA
[ENA]
¢þ
>WENV180346878
OBLN01377007
[OBLN] sediment metagenome; sediment
60
135
+
Cys
GCA
[ENA]
¢þ
>WENV181189842
OEOF01261327
[OEOF] activated sludge metagenome; Activated Sludge
33
108
+
Cys
GCA
[ENA]
¢þ
>WENV181732378
OGQD01029262
[OGQD] human gut metagenome; faeces
857
782
-
Cys
GCA
[ENA]
¢þ
>WENV181856648
OGWN01007337
[OGWN] freshwater metagenome; freshwater
639
564
-
Cys
GCA
[ENA]
¢þ
>W141274771
JABW01000025
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
9775
9850
+
Cys
GCA
[ENA]
¡û
>W141289902
JARS01000030
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
109127
109052
-
Cys
GCA
[ENA]
¡û
>W141289952
JART01000025
Campylobacterota
Arcobacter sp. AF1028 [JART]
126450
126525
+
Cys
GCA
[ENA]
¡û
>W141290001
JARU01000018
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
11636
11711
+
Cys
GCA
[ENA]
¡û
>W141290061
JARV01000016
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
11204
11279
+
Cys
GCA
[ENA]
¡û
>W141291682
JATO01000021
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
126511
126436
-
Cys
GCA
[ENA]
¡û
>WENV183060122
OLHW01016915
[OLHW] seawater metagenome; Sea water
405
330
-
Cys
GCA
[ENA]
¢þ
>WENV170014345
AYRE01004407
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
286
211
-
Cys
GCA
[ENA]
¢þ
>WENV170554713
CXWK01086886
[CXWK] wastewater metagenome; activated sludge
1102
1177
+
Cys
GCA
[ENA]
¢þ
>WENV170690891
LFRM01368739
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1333
1408
+
Cys
GCA
[ENA]
¢þ
>WENV170704606
LLEL01008415
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
74
1
-
Cys
GCA
[ENA]
¢þ
>WENV170704878
LLEN01007845
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
365
440
+
Cys
GCA
[ENA]
¢þ
>WENV170932830
MDTG01210296
[MDTG] marine metagenome; seawater
21
96
+
Cys
GCA
[ENA]
¢þ
>C181225260
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
2103783
2103858
+
Cys
GCA
-
¡û
>C191084549
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1744260
1744335
+
Cys
GCA
-
¡û
>C191095051
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1701744
1701819
+
Cys
GCA
-
¡û
>C191095097
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1753121
1753196
+
Cys
GCA
-
¡û
>C191178280
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
2058225
2058300
+
Cys
GCA
-
¡û
>W1910810901
MUXE01000028
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
1515
1440
-
Cys
GCA
[ENA]
¡û
>W1910810931
MUXF01000016
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
57478
57403
-
Cys
GCA
[ENA]
¡û
>W1911200291
NREP01000014
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
65523
65448
-
Cys
GCA
[ENA]
¡û
>W1911424341
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
346730
346655
-
Cys
GCA
[ENA]
¡û
>W1911424374
NXGD01000003
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
119133
119058
-
Cys
GCA
[ENA]
¡û
>W1911424419
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
434804
434879
+
Cys
GCA
[ENA]
¡û
>W1911424567
NXGH01000024
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
5950
6025
+
Cys
GCA
[ENA]
¡û
>W1911424580
NXGI01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
317222
317147
-
Cys
GCA
[ENA]
¡û
>W1911424635
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
219109
219034
-
Cys
GCA
[ENA]
¡û
>W1911424666
NXGK01000006
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
36090
36165
+
Cys
GCA
[ENA]
¡û
>W1911426371
NXIH01000003
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
71143
71218
+
Cys
GCA
[ENA]
¡û
>W1911426408
NXII01000001
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
130857
130932
+
Cys
GCA
[ENA]
¡û
>W1911426458
NXIJ01000001
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
59756
59831
+
Cys
GCA
[ENA]
¡û
>W1911576057
PDJS01000001
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
78001
77926
-
Cys
GCA
[ENA]
¡û
>W1911576223
PDJV01000031
Campylobacterota
Arcobacter sp. F2176 [PDJV]
256
331
+
Cys
GCA
[ENA]
¡û
>W1911576405
PDJZ01000005
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
148350
148425
+
Cys
GCA
[ENA]
¡û
>W1911576460
PDKB01000021
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
31971
31896
-
Cys
GCA
[ENA]
¡û
>W1911576723
PDKH01000003
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
228318
228393
+
Cys
GCA
[ENA]
¡û
>W1911576772
PDKI01000015
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
32181
32106
-
Cys
GCA
[ENA]
¡û
>W1911748928
QWFD01000004
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
73295
73220
-
Cys
GCA
[ENA]
¡û
>W1911748970
QWFE01000004
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
73295
73220
-
Cys
GCA
[ENA]
¡û
>W1911775180
QXMK01000006
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
76650
76575
-
Cys
GCA
[ENA]
¡û
>W1810058611
PDKA01000010
Campylobacterota
Arcobacter sp. FW59 [PDKA]
79451
79376
-
Cys
GCA
[ENA]
¡û
>W1810462582
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
52667
52742
+
Cys
GCA
[ENA]
¡û
>W1810462585
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
53193
53268
+
Cys
GCA
[ENA]
¡û
>W1810584189
QEYI01000002
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
108137
108062
-
Cys
GCA
[ENA]
¡û
>C11100384
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1984774
1984849
+
Cys
GCA
[Ensembl]
¡û
>C11101055
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2724091
2724016
-
Cys
GCA
[Ensembl]
¡û
>W1510762836
JAIQ01000058
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
12628
12553
-
Cys
GCA
[ENA]
¡û
>W1510762938
JAIT01000028
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
100305
100380
+
Cys
GCA
[ENA]
¡û
>W1510762964
JAIU01000030
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
35757
35832
+
Cys
GCA
[ENA]
¡û
>W1510763040
JAIW01000069
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
48075
48000
-
Cys
GCA
[ENA]
¡û
>W1510763070
JAIX01000080
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
252
327
+
Cys
GCA
[ENA]
¡û
>W1610584464
LCSK01000003
Campylobacterota
Arcobacter porcinus [LCSK]
107085
107160
+
Cys
GCA
[ENA]
¡û
>W1610584954
LCUI01000002
Campylobacterota
Arcobacter porcinus [LCUI]
217308
217383
+
Cys
GCA
[ENA]
¡û
>W1610584999
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
376032
376107
+
Cys
GCA
[ENA]
¡û
>W1610585049
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
117260
117185
-
Cys
GCA
[ENA]
¡û
>W1610699372
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
635579
635504
-
Cys
GCA
[ENA]
¡û
>W1610896358
LRUQ01000095
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
36486
36561
+
Cys
GCA
[ENA]
¡û
>W1610896384
LRUR01000066
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
148307
148382
+
Cys
GCA
[ENA]
¡û
>W1610896403
LRUS01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
14474
14399
-
Cys
GCA
[ENA]
¡û
>W1610896438
LRUT01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
46198
46273
+
Cys
GCA
[ENA]
¡û
>W1610896471
LRUU01000083
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
147052
147127
+
Cys
GCA
[ENA]
¡û
>W1610896499
LRUV01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
76756
76681
-
Cys
GCA
[ENA]
¡û
>W1610896521
LRUW01000048
Campylobacterota
Aliarcobacter skirrowii [LRUW]
70196
70271
+
Cys
GCA
[ENA]
¡û
>W1610896553
LRUX01000034
Campylobacterota
Aliarcobacter skirrowii [LRUX]
68847
68772
-
Cys
GCA
[ENA]
¡û
>W1610896589
LRUY01000083
Campylobacterota
Aliarcobacter skirrowii [LRUY]
54881
54956
+
Cys
GCA
[ENA]
¡û
>W1730029849
MKCO01000011
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
91760
91685
-
Cys
GCA
[ENA]
¡û
>W1710082866
BDIR01000013
Campylobacterota
Arcobacter sp. LA11 [BDIR]
22461
22386
-
Cys
GCA
[ENA]
¡û
>W1710703681
LCSK01000003
Campylobacterota
Arcobacter porcinus [LCSK]
107085
107160
+
Cys
GCA
[ENA]
¡û
>W1710704145
LCUI01000002
Campylobacterota
Arcobacter porcinus [LCUI]
217308
217383
+
Cys
GCA
[ENA]
¡û
>W1710704190
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
376032
376107
+
Cys
GCA
[ENA]
¡û
>W1710704240
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
117260
117185
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK