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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24893 (68 seq.)
>W1710883231
LMVL01000039
Alphaproteobacteria
Agrobacterium vitis [LMVL]
79356
79445
+
Ser
GGA
[ENA]
¡û
>W1710890871
LNCD01000140
Alphaproteobacteria
Rhizobium altiplani BR10423 [LNCD]
148887
148976
+
Ser
GGA
[ENA]
¡û
>W1710893182
LNEM01000030
Alphaproteobacteria
Rhizobiales bacterium Ga0077537 [LNEM]
210333
210244
-
Ser
GGA
[ENA]
¡û
>W1710893948
LNFG01000086
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
592
503
-
Ser
GGA
[ENA]
¡û
>W1710936054
LOKY01000012
Alphaproteobacteria
Rhizobium sp. R693 [LOKY]
325922
325833
-
Ser
GGA
[ENA]
¡û
>W1710936081
LOKZ01000001
Alphaproteobacteria
Rhizobium sp. R711 [LOKZ]
645458
645547
+
Ser
GGA
[ENA]
¡û
>W1710936128
LOLA01000001
Alphaproteobacteria
Rhizobium sp. R72 [LOLA]
645458
645547
+
Ser
GGA
[ENA]
¡û
>W1711315207
MAVS01000008
Alphaproteobacteria
Agrobacterium vitis [MAVS]
144467
144378
-
Ser
GGA
[ENA]
¡û
>W1711325894
MBEV01000003
Alphaproteobacteria
Agrobacterium vitis [MBEV]
456414
456503
+
Ser
GGA
[ENA]
¡û
>W1711325953
MBEX01000022
Alphaproteobacteria
Agrobacterium vitis [MBEX]
150558
150469
-
Ser
GGA
[ENA]
¡û
>W1711326078
MBEZ01000110
Alphaproteobacteria
Agrobacterium vitis [MBEZ]
156349
156260
-
Ser
GGA
[ENA]
¡û
>W1711326145
MBFB01000013
Alphaproteobacteria
Agrobacterium vitis [MBFB]
148761
148672
-
Ser
GGA
[ENA]
¡û
>W1711326220
MBFC01000060
Alphaproteobacteria
Agrobacterium vitis [MBFC]
154609
154520
-
Ser
GGA
[ENA]
¡û
>W1711326235
MBFD01000011
Alphaproteobacteria
Agrobacterium vitis [MBFD]
156364
156275
-
Ser
GGA
[ENA]
¡û
>W1711326316
MBFE01000083
Alphaproteobacteria
Agrobacterium vitis [MBFE]
154550
154461
-
Ser
GGA
[ENA]
¡û
>W1711489046
MKIM01000025
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
290344
290433
+
Ser
GGA
[ENA]
¡û
>W1711489104
MKIN01000020
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
141427
141338
-
Ser
GGA
[ENA]
¡û
>W1711489215
MKIP01000053
Alphaproteobacteria
Xaviernesmea oryzae [MKIP]
35963
35874
-
Ser
GGA
[ENA]
¡û
>W1711501833
MKSB01000092
Alphaproteobacteria
Rhizobiales bacterium 63-7 [MKSB]
22619
22708
+
Ser
GGA
[ENA]
¡û
>W1711959632
NBZE01000001
Alphaproteobacteria
Allorhizobium ampelinum vitis [NBZE]
154942
154853
-
Ser
GGA
[ENA]
¡û
>C171057112
CP017101
Alphaproteobacteria
Rhizobium gallicum IE4872 [CP017101]
212198
212109
-
Ser
GGA
-
¡û
>C171059095
CP017241
Alphaproteobacteria
Rhizobium etli 8C-3 [CP017241]
224018
223929
-
Ser
GGA
-
¡û
>C171115121
CP021030
Alphaproteobacteria
Rhizobium sp. NXC14 [CP021030]
201729
201640
-
Ser
GGA
-
¡û
>C171116110
CP021124
Alphaproteobacteria
Rhizobium sp. Kim5 [CP021124]
213156
213067
-
Ser
GGA
-
¡û
>W131173647
ARHV01000002
Alphaproteobacteria
Rhizobium sp. 42MFCr.1 [ARHV]
222941
222852
-
Ser
GGA
[ENA]
¡û
>W131214210
ATTQ01000002
Alphaproteobacteria
Rhizobium mongolense USDA 1844 [ATTQ]
152795
152706
-
Ser
GGA
[ENA]
¡û
>W131220066
ATZB01000011
Alphaproteobacteria
Rhizobium sullae WSM1592 [ATZB]
58918
58829
-
Ser
GGA
[ENA]
¡û
>W131242206
CANI01000002
Alphaproteobacteria
Rhizobium mesoamericanum STM3625 [CANI]
43563
43652
+
Ser
GGA
[ENA]
¡û
>W141004097
AEYE02000002
Alphaproteobacteria
Rhizobium grahamii CCGE 502 [AEYE]
98145
98234
+
Ser
GGA
[ENA]
¡û
>WENV181167422
OEIU01027796
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1212
1301
+
Ser
GGA
[ENA]
¢þ
>W141207489
AZNV01000010
Alphaproteobacteria
Rhizobium sp. IBUN [AZNV]
157611
157700
+
Ser
GGA
[ENA]
¡û
>W141277027
JAEG01000019
Alphaproteobacteria
Ciceribacter selenitireducens ATCC BAA-1503 [JAEG]
38254
38165
-
Ser
GGA
[ENA]
¡û
>WENV170000216
AERA01026162
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1471
1560
+
Ser
GGA
[ENA]
¢þ
>WENV170649493
JRYC01011991
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
1343
1432
+
Ser
GGA
[ENA]
¢þ
>WENV170650863
JRYE01036576
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
91
2
-
Ser
GGA
[ENA]
¢þ
>WENV170668052
LADL02000525
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
21140
21229
+
Ser
GGA
[ENA]
¢þ
>WENV170709351
LNFM01000279
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
150695
150784
+
Ser
GGA
[ENA]
¢þ
>WENV170711282
LNFM01004349
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3
92
+
Ser
GGA
[ENA]
¢þ
>WENV170711606
LNFM01006028
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3
92
+
Ser
GGA
[ENA]
¢þ
>WENV170712229
LNFM01011117
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12365
12276
-
Ser
GGA
[ENA]
¢þ
>WENV170712370
LNFM01012578
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
1
-
Ser
GGA
[ENA]
¢þ
>WENV170714145
LNFM01057127
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2510
2421
-
Ser
GGA
[ENA]
¢þ
>C181051557
CP021371
Alphaproteobacteria
Rhizobium sp. ACO-34A [CP021371]
328556
328645
+
Ser
GGA
-
¡û
>W141817670
JQKY01000004
Alphaproteobacteria
Rhizobium sp. CF394 [JQKY]
250994
250905
-
Ser
GGA
[ENA]
¡û
>W1910231986
FPEI01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
128074
128163
+
Ser
GGA
[ENA]
¡û
>W1910441815
FWER01000001
Alphaproteobacteria
Rhizobium sullae [FWER]
192522
192611
+
Ser
GGA
[ENA]
¡û
>W1910840667
NAAC01000001
Alphaproteobacteria
Rhizobium grahamii CCGM3 [NAAC]
255529
255618
+
Ser
GGA
[ENA]
¡û
>C09100973
CP000633
Alphaproteobacteria
Allorhizobium ampelinum S4 [CP000633, CP000634]
222461
222372
-
Ser
GGA
[Ensembl]
¡û
>W1911409463
NWSX01000008
Alphaproteobacteria
Rhizobium sp. J15 [NWSX]
114851
114762
-
Ser
GGA
[ENA]
¡û
>W1911409568
NWSZ01000021
Alphaproteobacteria
Rhizobium sp. L9 [NWSZ]
38517
38606
+
Ser
GGA
[ENA]
¡û
>W1911496138
OCMG01000004
Alphaproteobacteria
Ensifer adhaerens RP12G [OCMG]
510902
510991
+
Ser
GGA
[ENA]
¡û
>W1810147371
PIQN01000005
Alphaproteobacteria
Rhizobium sullae HCNT1 [PIQN]
85182
85093
-
Ser
GGA
[ENA]
¡û
>W1810195920
PKSP01000010
Alphaproteobacteria
Rhizobium sp. KAs_5_22 [PKSP]
3776983
3777072
+
Ser
GGA
[ENA]
¡û
>W1810273438
PSOW01000006
Alphaproteobacteria
Rhizobium sp. H4 [PSOW]
141607
141518
-
Ser
GGA
[ENA]
¡û
>C151013888
CP006877
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [CP006877]
214468
214379
-
Ser
GGA
[Ensembl]
¡û
>WENV11100574
AERA01026162
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
1471
1560
+
Ser
GGA
[ENA]
¡û
>C161056477
CP013490
Alphaproteobacteria
Rhizobium sp. N6212 [CP013490]
224863
224774
-
Ser
GGA
-
¡û
>C161057344
CP013580
Alphaproteobacteria
Rhizobium phaseoli N261 [CP013580]
248223
248134
-
Ser
GGA
-
¡û
>C161057446
CP013590
Alphaproteobacteria
Rhizobium sp. N871 [CP013590]
201235
201146
-
Ser
GGA
-
¡û
>W121086568
AKKA01000080
Alphaproteobacteria
Rhizobium sp. CF122 [AKKA]
72294
72383
+
Ser
GGA
[ENA]
¡û
>W1610745157
LMVL01000039
Alphaproteobacteria
Agrobacterium vitis [LMVL]
79356
79445
+
Ser
GGA
[ENA]
¡û
>W1610751267
LNCD01000140
Alphaproteobacteria
Rhizobium altiplani BR10423 [LNCD]
148887
148976
+
Ser
GGA
[ENA]
¡û
>W1610753448
LNEM01000030
Alphaproteobacteria
Rhizobiales bacterium Ga0077537 [LNEM]
210333
210244
-
Ser
GGA
[ENA]
¡û
>W1610754214
LNFG01000086
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
592
503
-
Ser
GGA
[ENA]
¡û
>W1710505153
FMTM01000001
Alphaproteobacteria
Rhizobium mongolense loessense [FMTM]
1334244
1334333
+
Ser
GGA
[ENA]
¡û
>W1710543980
FOAM01000004
Alphaproteobacteria
Xaviernesmea oryzae [FOAM]
335417
335506
+
Ser
GGA
[ENA]
¡û
>W1710606417
FWXU01000021
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
65286
65375
+
Ser
GGA
[ENA]
¡û
>W1710619390
JHUO01000002
Alphaproteobacteria
Rhizobium yanglingense [JHUO]
142488
142399
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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