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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2491 (30 seq.)
>W1711710502
MSZN01000010
Betaproteobacteria
Alcaligenes faecalis [MSZN]
113451
113356
-
SeC
TCA
[ENA]
¡û
>W1711710560
MSZO01000009
Betaproteobacteria
Alcaligenes faecalis [MSZO]
44418
44513
+
SeC
TCA
[ENA]
¡û
>C171115515
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3620079
3620174
+
SeC
TCA
-
¡û
>WENV183733539
PJTY01003982
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1698
1603
-
SeC
TCA
[ENA]
¢þ
>C181053234
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
3675117
3675212
+
SeC
TCA
-
¡û
>C181088592
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3366659
3366754
+
SeC
TCA
-
¡û
>C191085271
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3945550
3945645
+
Sec
TCA
-
¡û
>C191091143
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
2138605
2138700
+
Sec
TCA
-
¡û
>C191113932
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
568431
568526
+
Sec
TCA
-
¡û
>C191149629
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1505093
1505188
+
Sec
TCA
-
¡û
>W142000346
AVOG02000045
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
143824
143919
+
seC
TCA
[ENA]
¡û
>W142000634
BBJQ01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
274584
274489
-
seC
TCA
[ENA]
¡û
>W1810583904
QEXO01000003
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
410832
410927
+
Sec
TCA
[ENA]
¡û
>W1520001052
JQCV01000003
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
86634
86539
-
SeC
TCA
[ENA]
¡û
>W1520001386
JZBR01000001
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
307521
307426
-
SeC
TCA
[ENA]
¡û
>C162000054
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
2770746
2770651
-
SeC
TCA
[Ensembl]
¡û
>W122000204
AKMR01000017
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
21845
21940
+
seC
TCA
[ENA]
¡û
>W1610921531
LSUO01000020
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
43042
43137
+
SeC
TCA
[ENA]
¡û
>W1620000263
CYTB01000005
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
69055
69150
+
SeC
TCA
[ENA]
¡û
>W1620001329
LNOL01000036
Betaproteobacteria
Alcaligenes faecalis [LNOL]
70339
70434
+
SeC
TCA
[ENA]
¡û
>W1620001565
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
277862
277767
-
SeC
TCA
[ENA]
¡û
>W1720000215
BDHG01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
274711
274616
-
SeC
TCA
[ENA]
¡û
>W1720001748
LNOL01000036
Betaproteobacteria
Alcaligenes faecalis [LNOL]
70339
70434
+
SeC
TCA
[ENA]
¡û
>W1720001996
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
277862
277767
-
SeC
TCA
[ENA]
¡û
>W1720003169
MSZP01000002
Betaproteobacteria
Alcaligenes faecalis [MSZP]
327275
327180
-
SeC
TCA
[ENA]
¡û
>W1720003170
MSZQ01000014
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
34953
35048
+
SeC
TCA
[ENA]
¡û
>W1720003171
MSZR01000015
Betaproteobacteria
Alcaligenes faecalis [MSZR]
88887
88792
-
SeC
TCA
[ENA]
¡û
>W1720003177
MTBI01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
572887
572982
+
SeC
TCA
[ENA]
¡û
>W132000038
AMXV01000054
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
24964
25059
+
seC
TCA
[ENA]
¡û
>W132000272
AUBT01000006
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
216702
216607
-
seC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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