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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249157 (57 seq.)
>W1710909673
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
799845
799920
+
Thr
TGT
[ENA]
¡û
>W1710909696
LNQS01000005
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
477
402
-
Thr
TGT
[ENA]
¡û
>W1711228227
LXWK01000003
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
7199
7274
+
Thr
TGT
[ENA]
¡û
>W1711228243
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
303317
303242
-
Thr
TGT
[ENA]
¡û
>W1711270535
LZEJ01000001
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
7292
7217
-
Thr
TGT
[ENA]
¡û
>W1711270581
LZEJ01000075
Gammaproteobacteria
Alishewanella sp. HH-ZS [LZEJ]
460
385
-
Thr
TGT
[ENA]
¡û
>W1711486047
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
3107742
3107667
-
Thr
TGT
[ENA]
¡û
>W1711486080
MKEK01000001
Gammaproteobacteria
Rheinheimera salexigens KH87 [MKEK]
36483
36408
-
Thr
TGT
[ENA]
¡û
>W131180600
ARNG01000046
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
3370
3445
+
Thr
TGT
[ENA]
¡û
>W131225053
AUDG01000059
Gammaproteobacteria
Rheinheimera baltica DSM 14885 [AUDG]
3235
3310
+
Thr
TGT
[ENA]
¡û
>WENV181414269
OGCL01000163
[OGCL] hot springs metagenome; Hot spring water
72995
72920
-
Thr
TGT
[ENA]
¢þ
>WENV181414310
OGCL01000200
[OGCL] hot springs metagenome; Hot spring water
11560
11485
-
Thr
TGT
[ENA]
¢þ
>WENV181415175
OGCL01005192
[OGCL] hot springs metagenome; Hot spring water
6018
6093
+
Thr
TGT
[ENA]
¢þ
>WENV181844604
OGVW01010622
[OGVW] freshwater metagenome; freshwater
526
601
+
Thr
TGT
[ENA]
¢þ
>WENV170942229
MDTG01374256
[MDTG] marine metagenome; seawater
2965
3040
+
Thr
TGT
[ENA]
¢þ
>WENV170965197
MTET01004448
[MTET] soil metagenome; garden soil control
3604
3679
+
Thr
TGT
[ENA]
¢þ
>WENV170965682
MTEV01000080
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
530
455
-
Thr
TGT
[ENA]
¢þ
>WENV170966042
MTEX01000012
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
3455
3530
+
Thr
TGT
[ENA]
¢þ
>WENV170966212
MTEX01004307
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
5989
5914
-
Thr
TGT
[ENA]
¢þ
>C191129056
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
298097
298172
+
Thr
TGT
-
¡û
>C191129091
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
3465615
3465540
-
Thr
TGT
-
¡û
>C191153492
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
743744
743819
+
Thr
TGT
-
¡û
>C191153523
CP037745
Gammaproteobacteria
Rheinheimera sp. D18 [CP037745]
3035143
3035068
-
Thr
TGT
-
¡û
>W141779378
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
81754
81679
-
Thr
TGT
[ENA]
¡û
>W141779421
JONU01000017
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
28942
28867
-
Thr
TGT
[ENA]
¡û
>W1911492749
OBEB01000012
Gammaproteobacteria
Arsukibacterium tuosuense CGMCC 1.12461 [OBEB]
36663
36588
-
Thr
TGT
[ENA]
¡û
>W1911597936
PNRD01000004
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
239084
239009
-
Thr
TGT
[ENA]
¡û
>W1911597952
PNRD01000012
Gammaproteobacteria
Rheinheimera aquimaris B26 [PNRD]
3129
3204
+
Thr
TGT
[ENA]
¡û
>WENV033271
AACY021515296
Marine microbial communities from Global Ocean Sampling (GOS)
495
420
-
Thr
TGT
[ENA]
>W1511566777
LAHO01000029
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
515
440
-
Thr
TGT
[ENA]
¡û
>W1511566834
LAHP01000046
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
522
447
-
Thr
TGT
[ENA]
¡û
>W1511573501
LAMX01000040
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
494
419
-
Thr
TGT
[ENA]
¡û
>W1511584704
LAVS01000030
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
25143
25218
+
Thr
TGT
[ENA]
¡û
>W1511584737
LAVS01000092
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
19057
18982
-
Thr
TGT
[ENA]
¡û
>W11162886
AFHI01000025
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
11090
11165
+
Thr
TGT
[ENA]
¡û
>W11162890
AFHI01000029
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
569
494
-
Thr
TGT
[ENA]
¡û
>C161058488
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2279592
2279667
+
Thr
TGT
-
¡û
>C161058514
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4439908
4439833
-
Thr
TGT
-
¡û
>W121040556
AHTH01000034
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
3218
3293
+
Thr
TGT
[ENA]
¡û
>W121040573
AHTH01000047
Gammaproteobacteria
Alishewanella jeotgali KCTC 22429 [AHTH]
16496
16571
+
Thr
TGT
[ENA]
¡û
>W121087046
AKKU01000012
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
98422
98347
-
Thr
TGT
[ENA]
¡û
>W121087054
AKKU01000023
Gammaproteobacteria
Alishewanella agri BL06 [AKKU]
3080
3155
+
Thr
TGT
[ENA]
¡û
>W121104111
ALAB01000006
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
15522
15597
+
Thr
TGT
[ENA]
¡û
>W121104141
ALAB01000033
Gammaproteobacteria
Alishewanella aestuarii B11 [ALAB]
37911
37836
-
Thr
TGT
[ENA]
¡û
>W121124715
BAFK01000024
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
28294
28219
-
Thr
TGT
[ENA]
¡û
>W121124722
BAFK01000045
Gammaproteobacteria
Rheinheimera nanhaiensis E407-8 [BAFK]
866
791
-
Thr
TGT
[ENA]
¡û
>W1610585474
LCWL01000114
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
3525
3600
+
Thr
TGT
[ENA]
¡û
>W1610585479
LCWL01000117
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
15441
15516
+
Thr
TGT
[ENA]
¡û
>W1610768032
LNQS01000001
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
799845
799920
+
Thr
TGT
[ENA]
¡û
>W1610768055
LNQS01000005
Gammaproteobacteria
Rheinheimera sp. EpRS3 [LNQS]
477
402
-
Thr
TGT
[ENA]
¡û
>W1611012144
LXWK01000003
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
7199
7274
+
Thr
TGT
[ENA]
¡û
>W1611012160
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
303317
303242
-
Thr
TGT
[ENA]
¡û
>W1710533934
FNRM01000010
Gammaproteobacteria
Alkalimonas amylolytica [FNRM]
83228
83303
+
Thr
TGT
[ENA]
¡û
>W1710540904
FNXF01000015
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
12198
12273
+
Thr
TGT
[ENA]
¡û
>W1710540917
FNXF01000026
Gammaproteobacteria
Rheinheimera pacifica [FNXF]
3253
3328
+
Thr
TGT
[ENA]
¡û
>W1710704665
LCWL01000114
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
3525
3600
+
Thr
TGT
[ENA]
¡û
>W1710704670
LCWL01000117
Gammaproteobacteria
Alishewanella sp. WH16-1 [LCWL]
15441
15516
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK