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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249229 (24 seq.)
>W131179592
ARMN01000017
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
104593
104676
+
Tyr
GTA
[ENA]
¡û
>W131179605
ARMN01000022
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
160
77
-
Tyr
GTA
[ENA]
¡û
>WENV170112004
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1363
1280
-
Tyr
GTA
[ENA]
¡û
>WENV170112328
CEGE01001775
[CEGE] microbial mat metagenome; grass silage
370
287
-
Tyr
GTA
[ENA]
¡û
>WENV170112436
CEGE01010088
[CEGE] microbial mat metagenome; grass silage
158
75
-
Tyr
GTA
[ENA]
¡û
>WENV170112584
CEGF01005020
[CEGF] microbial mat metagenome; grass silage
2930
2847
-
Tyr
GTA
[ENA]
¡û
>WENV170655034
JTFN01002345
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
58
141
+
Tyr
GTA
[ENA]
¡û
>WENV170655537
JTFN01042465
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
136
219
+
Tyr
GTA
[ENA]
¡û
>WENV170657125
JTFO01088912
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
88
5
-
Tyr
GTA
[ENA]
¡û
>WENV170657414
JTFO01144535
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
87
4
-
Tyr
GTA
[ENA]
¡û
>WENV170657515
JTFO01175916
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
85
2
-
Tyr
GTA
[ENA]
¡û
>WENV170658285
JTFP01080934
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1624
1707
+
Tyr
GTA
[ENA]
¡û
>W2010683105
JACEMT010000038
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
1529
1446
-
Tyr
GTA
[ENA]
¡û
>W2010683124
JACEMT010000046
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
23549
23632
+
Tyr
GTA
[ENA]
¡û
>W2012230774
WBOL01000011
Gammaproteobacteria
Nitrincola schmidtii NCAIM B.02626 [WBOL]
83328
83411
+
Tyr
GTA
[ENA]
¡û
>C211000099
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3648258
3648175
-
Tyr
GTA
-
¡û
>C211000137
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
1092585
1092502
-
Tyr
GTA
-
¡û
>C211032069
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
242590
242673
+
Tyr
GTA
-
¡û
>C211032124
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
1531804
1531721
-
Tyr
GTA
-
¡û
>C231019773
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3600908
3600825
-
Tyr
GTA
-
¡û
>C231019810
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
1104553
1104470
-
Tyr
GTA
-
¡û
>W1511349199
JRLB01000110
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
17030
16947
-
Tyr
GTA
[ENA]
¡û
>W1710533759
FNRJ01000007
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
93412
93495
+
Tyr
GTA
[ENA]
¡û
>W1710533765
FNRJ01000011
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
119248
119165
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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