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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249882 (124 seq.)
>W1711078233
LSMR01000137
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
2883
2808
-
Asn
GTT
[ENA]
¡û
>W1711078246
LSMR01000237
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
2082
2157
+
Asn
GTT
[ENA]
¡û
>W1711078247
LSMR01000237
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
2182
2257
+
Asn
GTT
[ENA]
¡û
>W1711128949
LUTR01000001
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
2
77
+
Asn
GTT
[ENA]
¡û
>W1711128972
LUTR01000008
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
32400
32475
+
Asn
GTT
[ENA]
¡û
>W1711129004
LUTR01000042
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76
1
-
Asn
GTT
[ENA]
¡û
>W1711129027
LUTS01000002
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
430853
430778
-
Asn
GTT
[ENA]
¡û
>W1711129058
LUTS01000010
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
94304
94229
-
Asn
GTT
[ENA]
¡û
>W1711129071
LUTS01000030
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
76
1
-
Asn
GTT
[ENA]
¡û
>W131175713
ARJM01000011
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
375
300
-
Asn
GTT
[ENA]
¡û
>W131175750
ARJM01000062
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
229233
229308
+
Asn
GTT
[ENA]
¡û
>w015090
AAOW01000012
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
37319
37247
-
Asn
GTT
[ENA]
¡û
>w015089
AAOW01000012
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
37423
37346
-
Asn
GTT
[ENA]
¡û
>WENV180042510
LQAF01000663
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3687
3762
+
Asn
GTT
[ENA]
¢þ
>WENV180299042
OBJA01911431
[OBJA] soil metagenome; sediment, water from around vicinity
121
196
+
Asn
GTT
[ENA]
¢þ
>WENV182540579
OJAK01000112
[OJAK] seawater metagenome; Sea water
550
475
-
Asn
GTT
[ENA]
¢þ
>WENV182540692
OJAP01000179
[OJAP] seawater metagenome; Sea water
466
391
-
Asn
GTT
[ENA]
¢þ
>WENV182541155
OJAS01000326
[OJAS] seawater metagenome; Sea water
251
176
-
Asn
GTT
[ENA]
¢þ
>WENV182541169
OJAS01000707
[OJAS] seawater metagenome; Sea water
2207
2282
+
Asn
GTT
[ENA]
¢þ
>WENV182541836
OJAU01005665
[OJAU] seawater metagenome; Sea water
995
920
-
Asn
GTT
[ENA]
¢þ
>WENV182542071
OJAV01001638
[OJAV] seawater metagenome; Sea water
1141
1216
+
Asn
GTT
[ENA]
¢þ
>WENV182542384
OJAY01000299
[OJAY] seawater metagenome; Sea water
13736
13661
-
Asn
GTT
[ENA]
¢þ
>WENV182543701
OJBC01000399
[OJBC] seawater metagenome; Sea water
13758
13833
+
Asn
GTT
[ENA]
¢þ
>WENV182543727
OJBC01001045
[OJBC] seawater metagenome; Sea water
1691
1616
-
Asn
GTT
[ENA]
¢þ
>WENV182544018
OJBE01000010
[OJBE] seawater metagenome; Sea water
119173
119098
-
Asn
GTT
[ENA]
¢þ
>WENV182544033
OJBE01000046
[OJBE] seawater metagenome; Sea water
13301
13226
-
Asn
GTT
[ENA]
¢þ
>WENV182544713
OJBJ01000146
[OJBJ] seawater metagenome; Sea water
7393
7468
+
Asn
GTT
[ENA]
¢þ
>WENV182544737
OJBJ01000491
[OJBJ] seawater metagenome; Sea water
6332
6257
-
Asn
GTT
[ENA]
¢þ
>WENV182544791
OJBJ01002738
[OJBJ] seawater metagenome; Sea water
1246
1321
+
Asn
GTT
[ENA]
¢þ
>WENV182544796
OJBJ01003598
[OJBJ] seawater metagenome; Sea water
761
836
+
Asn
GTT
[ENA]
¢þ
>WENV182545881
OJBO01000012
[OJBO] seawater metagenome; Sea water
100964
101039
+
Asn
GTT
[ENA]
¢þ
>WENV182546964
OJBR01000026
[OJBR] seawater metagenome; Sea water
88898
88823
-
Asn
GTT
[ENA]
¢þ
>WENV182547054
OJBR01000280
[OJBR] seawater metagenome; Sea water
12087
12012
-
Asn
GTT
[ENA]
¢þ
>WENV182547796
OJBT01006586
[OJBT] seawater metagenome; Sea water
578
503
-
Asn
GTT
[ENA]
¢þ
>WENV182549510
OJBY01001533
[OJBY] seawater metagenome; Sea water
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV182549934
OJBZ01000571
[OJBZ] seawater metagenome; Sea water
6439
6364
-
Asn
GTT
[ENA]
¢þ
>WENV182551577
OJCE01000087
[OJCE] seawater metagenome; Sea water
2972
2897
-
Asn
GTT
[ENA]
¢þ
>WENV182551708
OJCH01000053
[OJCH] seawater metagenome; Sea water
8307
8382
+
Asn
GTT
[ENA]
¢þ
>WENV182551722
OJCH01000432
[OJCH] seawater metagenome; Sea water
2261
2186
-
Asn
GTT
[ENA]
¢þ
>WENV182552442
OJCK01000085
[OJCK] seawater metagenome; Sea water
44137
44212
+
Asn
GTT
[ENA]
¢þ
>WENV182552463
OJCK01000189
[OJCK] seawater metagenome; Sea water
22391
22316
-
Asn
GTT
[ENA]
¢þ
>WENV182555998
OJDF01000985
[OJDF] seawater metagenome; Sea water
1107
1032
-
Asn
GTT
[ENA]
¢þ
>WENV182557479
OJDK01000037
[OJDK] seawater metagenome; Sea water
3571
3496
-
Asn
GTT
[ENA]
¢þ
>WENV182557582
OJDK01000402
[OJDK] seawater metagenome; Sea water
7423
7498
+
Asn
GTT
[ENA]
¢þ
>WENV182559544
OJDQ01000102
[OJDQ] seawater metagenome; Sea water
22445
22370
-
Asn
GTT
[ENA]
¢þ
>WENV182562220
OJDZ01000118
[OJDZ] seawater metagenome; Sea water
13454
13379
-
Asn
GTT
[ENA]
¢þ
>WENV182562250
OJDZ01000254
[OJDZ] seawater metagenome; Sea water
11900
11825
-
Asn
GTT
[ENA]
¢þ
>WENV182566711
OJEM01000618
[OJEM] seawater metagenome; Sea water
1227
1302
+
Asn
GTT
[ENA]
¢þ
>WENV182567046
OJEN01000885
[OJEN] seawater metagenome; Sea water
1691
1616
-
Asn
GTT
[ENA]
¢þ
>WENV182567350
OJEO01000142
[OJEO] seawater metagenome; Sea water
7746
7821
+
Asn
GTT
[ENA]
¢þ
>WENV182567995
OJEP01009354
[OJEP] seawater metagenome; Sea water
840
765
-
Asn
GTT
[ENA]
¢þ
>WENV182568661
OJEW01000119
[OJEW] seawater metagenome; Sea water
320
245
-
Asn
GTT
[ENA]
¢þ
>WENV182568663
OJEW01000124
[OJEW] seawater metagenome; Sea water
22391
22316
-
Asn
GTT
[ENA]
¢þ
>WENV182568664
OJEW01000132
[OJEW] seawater metagenome; Sea water
19374
19299
-
Asn
GTT
[ENA]
¢þ
>WENV182568667
OJEW01000142
[OJEW] seawater metagenome; Sea water
11683
11608
-
Asn
GTT
[ENA]
¢þ
>WENV182575078
OJFT01000026
[OJFT] seawater metagenome; Sea water
1467
1542
+
Asn
GTT
[ENA]
¢þ
>WENV182576978
OJGC01000094
[OJGC] seawater metagenome; Sea water
1043
968
-
Asn
GTT
[ENA]
¢þ
>WENV182577615
OJGH01000006
[OJGH] seawater metagenome; Sea water
7427
7502
+
Asn
GTT
[ENA]
¢þ
>WENV182577645
OJGH01000134
[OJGH] seawater metagenome; Sea water
11683
11608
-
Asn
GTT
[ENA]
¢þ
>WENV182577671
OJGH01000484
[OJGH] seawater metagenome; Sea water
1001
926
-
Asn
GTT
[ENA]
¢þ
>WENV182582884
OJHC01001629
[OJHC] seawater metagenome; Sea water
141
216
+
Asn
GTT
[ENA]
¢þ
>WENV182587308
OJHM01000339
[OJHM] seawater metagenome; Sea water
7967
7892
-
Asn
GTT
[ENA]
¢þ
>WENV182587357
OJHM01001233
[OJHM] seawater metagenome; Sea water
3022
2947
-
Asn
GTT
[ENA]
¢þ
>WENV182587975
OJHO01000488
[OJHO] seawater metagenome; Sea water
15752
15827
+
Asn
GTT
[ENA]
¢þ
>WENV182588033
OJHO01001239
[OJHO] seawater metagenome; Sea water
6345
6420
+
Asn
GTT
[ENA]
¢þ
>WENV182588034
OJHO01001271
[OJHO] seawater metagenome; Sea water
1613
1538
-
Asn
GTT
[ENA]
¢þ
>WENV182588295
OJHR01000601
[OJHR] seawater metagenome; Sea water
1577
1652
+
Asn
GTT
[ENA]
¢þ
>WENV182589609
OJIE01000028
[OJIE] seawater metagenome; Sea water
3729
3654
-
Asn
GTT
[ENA]
¢þ
>WENV182591476
OJIO01000159
[OJIO] seawater metagenome; Sea water
26680
26605
-
Asn
GTT
[ENA]
¢þ
>WENV182591515
OJIO01000271
[OJIO] seawater metagenome; Sea water
9584
9659
+
Asn
GTT
[ENA]
¢þ
>WENV183055204
OLGX01000147
[OLGX] seawater metagenome; Sea water
13736
13661
-
Asn
GTT
[ENA]
¢þ
>WENV183056759
OLHJ01012070
[OLHJ] seawater metagenome; Sea water
554
479
-
Asn
GTT
[ENA]
¢þ
>WENV183057039
OLHK01000948
[OLHK] seawater metagenome; Sea water
4016
4091
+
Asn
GTT
[ENA]
¢þ
>WENV183057063
OLHK01001544
[OLHK] seawater metagenome; Sea water
2912
2837
-
Asn
GTT
[ENA]
¢þ
>WENV183057266
OLHL01000097
[OLHL] seawater metagenome; Sea water
31139
31214
+
Asn
GTT
[ENA]
¢þ
>WENV183057320
OLHL01000349
[OLHL] seawater metagenome; Sea water
1046
971
-
Asn
GTT
[ENA]
¢þ
>WENV183059158
OLHT01000274
[OLHT] seawater metagenome; Sea water
3044
2969
-
Asn
GTT
[ENA]
¢þ
>WENV183059555
OLHV01000003
[OLHV] seawater metagenome; Sea water
35124
35199
+
Asn
GTT
[ENA]
¢þ
>WENV183059575
OLHV01000013
[OLHV] seawater metagenome; Sea water
150542
150617
+
Asn
GTT
[ENA]
¢þ
>WENV183059584
OLHV01000028
[OLHV] seawater metagenome; Sea water
22580
22655
+
Asn
GTT
[ENA]
¢þ
>WENV183059620
OLHV01000081
[OLHV] seawater metagenome; Sea water
39042
39117
+
Asn
GTT
[ENA]
¢þ
>WENV183522117
OMOM01000126
[OMOM] seawater metagenome; Sea water
39813
39888
+
Asn
GTT
[ENA]
¢þ
>WENV183718329
PDWJ01003358
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
476
401
-
Asn
GTT
[ENA]
¢þ
>WENV183718330
PDWJ01003358
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
366
291
-
Asn
GTT
[ENA]
¢þ
>WENV183718969
PDWJ01008188
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1171
1246
+
Asn
GTT
[ENA]
¢þ
>WENV183794842
PVBE010127184
[PVBE] marine metagenome; water
179
254
+
Asn
GTT
[ENA]
¢þ
>WENV170015497
AZIH01001364
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
438
363
-
Asn
GTT
[ENA]
¢þ
>WENV170016324
AZIK01000010
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
327
252
-
Asn
GTT
[ENA]
¢þ
>WENV170263471
CERC01051443
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
303
228
-
Asn
GTT
[ENA]
¢þ
>WENV170834891
MDSZ01104471
[MDSZ] marine metagenome; seawater
52466
52391
-
Asn
GTT
[ENA]
¢þ
>WENV170834892
MDSZ01104471
[MDSZ] marine metagenome; seawater
52367
52292
-
Asn
GTT
[ENA]
¢þ
>WENV170931042
MDTG01177596
[MDTG] marine metagenome; seawater
5226
5301
+
Asn
GTT
[ENA]
¢þ
>C181067787
CP022530
Gammaproteobacteria
Bacterioplanes sanyensis NV9 [CP022530]
3836688
3836763
+
Asn
GTT
-
¡û
>W141713653
JMSZ01000016
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
484334
484409
+
Asn
GTT
[ENA]
¡û
>W141713685
JMSZ01000032
Gammaproteobacteria
Nitrincola lacisaponensis [JMSZ]
106280
106205
-
Asn
GTT
[ENA]
¡û
>W141775980
JOKG01000004
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
545712
545637
-
Asn
GTT
[ENA]
¡û
>W141775984
JOKG01000004
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
545196
545121
-
Asn
GTT
[ENA]
¡û
>W1911708821
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
286699
286624
-
Asn
GTT
[ENA]
¡û
>W1911708822
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
286604
286529
-
Asn
GTT
[ENA]
¡û
>W1911708823
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
286511
286436
-
Asn
GTT
[ENA]
¡û
>W1810779422
QQOH01000001
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
1540238
1540313
+
Asn
GTT
[ENA]
¡û
>W1810779423
QQOH01000001
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
1540347
1540422
+
Asn
GTT
[ENA]
¡û
>W1810779461
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
139614
139539
-
Asn
GTT
[ENA]
¡û
>W1511349164
JRLB01000010
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
104840
104765
-
Asn
GTT
[ENA]
¡û
>W1511349170
JRLB01000023
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
884
959
+
Asn
GTT
[ENA]
¡û
>C161054035
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4482455
4482380
-
Asn
GTT
[Ensembl]
¡û
>C161054039
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4481939
4481864
-
Asn
GTT
[Ensembl]
¡û
>C161091186
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
4223666
4223591
-
Asn
GTT
[Ensembl]
¡û
>C161091206
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
1926383
1926308
-
Asn
GTT
[Ensembl]
¡û
>W1610062727
BCNS01000166
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
4301
4376
+
Asn
GTT
[ENA]
¡û
>W1610062729
BCNS01000166
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
4593
4668
+
Asn
GTT
[ENA]
¡û
>W1610062733
BCNS01000184
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
14299
14374
+
Asn
GTT
[ENA]
¡û
>W1610917249
LSMR01000137
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
2883
2808
-
Asn
GTT
[ENA]
¡û
>W1610917262
LSMR01000237
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
2082
2157
+
Asn
GTT
[ENA]
¡û
>W1610917263
LSMR01000237
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
2182
2257
+
Asn
GTT
[ENA]
¡û
>W1610940022
LUTR01000001
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
2
77
+
Asn
GTT
[ENA]
¡û
>W1610940045
LUTR01000008
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
32400
32475
+
Asn
GTT
[ENA]
¡û
>W1610940077
LUTR01000042
Gammaproteobacteria
Neptuniibacter marinus ATR 1.1 [LUTR]
76
1
-
Asn
GTT
[ENA]
¡û
>W1610940100
LUTS01000002
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
430853
430778
-
Asn
GTT
[ENA]
¡û
>W1610940131
LUTS01000010
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
94304
94229
-
Asn
GTT
[ENA]
¡û
>W1610940144
LUTS01000030
Gammaproteobacteria
Neptuniibacter pectenicola LFT 1.8 [LUTS]
76
1
-
Asn
GTT
[ENA]
¡û
>W1710060203
BCNS01000166
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
4301
4376
+
Asn
GTT
[ENA]
¡û
>W1710060205
BCNS01000166
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
4593
4668
+
Asn
GTT
[ENA]
¡û
>W1710060209
BCNS01000184
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
14299
14374
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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