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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249892 (52 seq.)
>W1711177586
LWGC01001530
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
4309
4234
-
Asn
GTT
[ENA]
¡û
>W1711177588
LWGC01001530
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
4089
4014
-
Asn
GTT
[ENA]
¡û
>C171068017
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
1659875
1659800
-
Asn
GTT
-
¡û
>C171068019
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
1521605
1521530
-
Asn
GTT
-
¡û
>WENV180051212
MPLU02198220
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
509
584
+
Asn
GTT
[ENA]
¢þ
>WENV182541890
OJAU01023880
[OJAU] seawater metagenome; Sea water
220
145
-
Asn
GTT
[ENA]
¢þ
>WENV182541989
OJAV01000161
[OJAV] seawater metagenome; Sea water
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV182542382
OJAY01000296
[OJAY] seawater metagenome; Sea water
3
78
+
Asn
GTT
[ENA]
¢þ
>WENV182544030
OJBE01000034
[OJBE] seawater metagenome; Sea water
62580
62655
+
Asn
GTT
[ENA]
¢þ
>WENV182546862
OJBP01010273
[OJBP] seawater metagenome; Sea water
221
146
-
Asn
GTT
[ENA]
¢þ
>WENV182546942
OJBR01000005
[OJBR] seawater metagenome; Sea water
13150
13075
-
Asn
GTT
[ENA]
¢þ
>WENV182546952
OJBR01000018
[OJBR] seawater metagenome; Sea water
94489
94414
-
Asn
GTT
[ENA]
¢þ
>WENV182549268
OJBY01000095
[OJBY] seawater metagenome; Sea water
18401
18326
-
Asn
GTT
[ENA]
¢þ
>WENV182549763
OJBZ01000005
[OJBZ] seawater metagenome; Sea water
13152
13077
-
Asn
GTT
[ENA]
¢þ
>WENV182549772
OJBZ01000008
[OJBZ] seawater metagenome; Sea water
93125
93200
+
Asn
GTT
[ENA]
¢þ
>WENV182555826
OJDD01001561
[OJDD] seawater metagenome; Sea water
3441
3366
-
Asn
GTT
[ENA]
¢þ
>WENV182557453
OJDK01000007
[OJDK] seawater metagenome; Sea water
72446
72371
-
Asn
GTT
[ENA]
¢þ
>WENV182557499
OJDK01000068
[OJDK] seawater metagenome; Sea water
13151
13076
-
Asn
GTT
[ENA]
¢þ
>WENV182559505
OJDQ01000009
[OJDQ] seawater metagenome; Sea water
41209
41134
-
Asn
GTT
[ENA]
¢þ
>WENV182559516
OJDQ01000030
[OJDQ] seawater metagenome; Sea water
35735
35810
+
Asn
GTT
[ENA]
¢þ
>WENV182562156
OJDZ01000004
[OJDZ] seawater metagenome; Sea water
189062
189137
+
Asn
GTT
[ENA]
¢þ
>WENV182562167
OJDZ01000016
[OJDZ] seawater metagenome; Sea water
94489
94414
-
Asn
GTT
[ENA]
¢þ
>WENV182588673
OJHW01001523
[OJHW] seawater metagenome; Sea water
1163
1238
+
Asn
GTT
[ENA]
¢þ
>WENV183055117
OLGX01000003
[OLGX] seawater metagenome; Sea water
94532
94457
-
Asn
GTT
[ENA]
¢þ
>WENV183057343
OLHL01000495
[OLHL] seawater metagenome; Sea water
18671
18596
-
Asn
GTT
[ENA]
¢þ
>WENV183059566
OLHV01000007
[OLHV] seawater metagenome; Sea water
192788
192863
+
Asn
GTT
[ENA]
¢þ
>WENV183059580
OLHV01000024
[OLHV] seawater metagenome; Sea water
95107
95032
-
Asn
GTT
[ENA]
¢þ
>WENV183522070
OMOM01000043
[OMOM] seawater metagenome; Sea water
35735
35810
+
Asn
GTT
[ENA]
¢þ
>WENV183798241
PVBE010401531
[PVBE] marine metagenome; water
347
272
-
Asn
GTT
[ENA]
¢þ
>WENV170015637
AZII01000422
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
176
251
+
Asn
GTT
[ENA]
¢þ
>WENV170015701
AZII01003820
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
1404
1479
+
Asn
GTT
[ENA]
¢þ
>WENV170016354
AZIK01000769
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
66324
66249
-
Asn
GTT
[ENA]
¢þ
>WENV170016487
AZIK01009156
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
36901
36826
-
Asn
GTT
[ENA]
¢þ
>WENV170288709
CERX01116126
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
202
277
+
Asn
GTT
[ENA]
¢þ
>WENV170315771
CESO01266966
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
712
637
-
Asn
GTT
[ENA]
¢þ
>WENV170427150
CEUQ01150693
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
965
890
-
Asn
GTT
[ENA]
¢þ
>WENV170564901
CZQC01000016
[CZQC] hydrothermal vent metagenome; ocean water
886
811
-
Asn
GTT
[ENA]
¢þ
>WENV170564926
CZQC01000066
[CZQC] hydrothermal vent metagenome; ocean water
27024
27099
+
Asn
GTT
[ENA]
¢þ
>WENV170572215
FLOH01000632
[FLOH] marine metagenome; water
26816
26891
+
Asn
GTT
[ENA]
¢þ
>WENV170683404
LFIK01010933
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
5411
5486
+
Asn
GTT
[ENA]
¢þ
>WENV170683668
LFIK01018571
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
119
44
-
Asn
GTT
[ENA]
¢þ
>WENV170926950
MDTG01108932
[MDTG] marine metagenome; seawater
3025
3100
+
Asn
GTT
[ENA]
¢þ
>WENV170929247
MDTG01147223
[MDTG] marine metagenome; seawater
98107
98182
+
Asn
GTT
[ENA]
¢þ
>WENV170934399
MDTG01237879
[MDTG] marine metagenome; seawater
1777
1702
-
Asn
GTT
[ENA]
¢þ
>WENV170938397
MDTG01308324
[MDTG] marine metagenome; seawater
2807
2882
+
Asn
GTT
[ENA]
¢þ
>WENV170942955
MDTG01387705
[MDTG] marine metagenome; seawater
83566
83491
-
Asn
GTT
[ENA]
¢þ
>C151013113
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1500766
1500691
-
Asn
GTT
[Ensembl]
¡û
>C151013115
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1366399
1366324
-
Asn
GTT
[Ensembl]
¡û
>C131020992
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
2242162
2242237
+
Asn
GTT
[Ensembl]
¡û
>C131020994
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
2388945
2389020
+
Asn
GTT
[Ensembl]
¡û
>W1610985899
LWGC01001530
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
4309
4234
-
Asn
GTT
[ENA]
¡û
>W1610985901
LWGC01001530
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
4089
4014
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK