This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.249907 (53 seq.)
>W1710862585
LMEM01000012
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
350812
350887
+
Ala
CGC
[ENA]
¡û
>W1711072370
LSHN01000057
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
51143
51068
-
Ala
CGC
[ENA]
¡û
>W1711072592
LSHS01000162
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
37292
37217
-
Ala
CGC
[ENA]
¡û
>W1711072667
LSHU01000059
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
30464
30539
+
Ala
CGC
[ENA]
¡û
>W1711175595
LWEW01000315
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
563
488
-
Ala
CGC
[ENA]
¡û
>W1711175657
LWEW01001972
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
4585
4660
+
Ala
CGC
[ENA]
¡û
>C171064530
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1220509
1220584
+
Ala
CGC
-
¡û
>C171101139
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
871380
871455
+
Ala
CGC
-
¡û
>C171105924
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
2791391
2791316
-
Ala
CGC
-
¡û
>W131164648
ARAY01000011
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
80365
80290
-
Ala
CGC
[ENA]
¡û
>W141193324
AYSC01000013
Alphaproteobacteria
Blastomonas sp. CACIA14H2 [AYSC]
24520
24595
+
Ala
CGC
[ENA]
¡û
>WENV182544879
OJBK01003643
[OJBK] seawater metagenome; Sea water
847
772
-
Ala
CGC
[ENA]
¢þ
>WENV182547874
OJBU01000769
[OJBU] seawater metagenome; Sea water
5421
5346
-
Ala
CGC
[ENA]
¢þ
>WENV182549327
OJBY01000263
[OJBY] seawater metagenome; Sea water
897
972
+
Ala
CGC
[ENA]
¢þ
>WENV182549384
OJBY01000549
[OJBY] seawater metagenome; Sea water
526
601
+
Ala
CGC
[ENA]
¢þ
>WENV182559900
OJDQ01016698
[OJDQ] seawater metagenome; Sea water
300
375
+
Ala
CGC
[ENA]
¢þ
>WENV182563893
OJED01001585
[OJED] seawater metagenome; Sea water
2659
2584
-
Ala
CGC
[ENA]
¢þ
>WENV182563937
OJED01004134
[OJED] seawater metagenome; Sea water
917
992
+
Ala
CGC
[ENA]
¢þ
>WENV182593084
OJIS01038668
[OJIS] seawater metagenome; Sea water
157
232
+
Ala
CGC
[ENA]
¢þ
>WENV183684275
ORMF010686600
[ORMF] groundwater metagenome; groundwater
172
97
-
Ala
CGC
[ENA]
¢þ
>WENV183689056
ORMF011385591
[ORMF] groundwater metagenome; groundwater
64
139
+
Ala
CGC
[ENA]
¢þ
>WENV183691715
ORMF011806019
[ORMF] groundwater metagenome; groundwater
973
1048
+
Ala
CGC
[ENA]
¢þ
>WENV183749918
PPFU01231719
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3910
3985
+
Ala
CGC
[ENA]
¢þ
>WENV170461221
CEVC01327761
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
267
342
+
Ala
CGC
[ENA]
¢þ
>WENV170584265
FUFK010200997
[FUFK] metagenome; unknown
99
24
-
Ala
CGC
[ENA]
¢þ
>WENV170708961
LNFM01000051
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
149638
149713
+
Ala
CGC
[ENA]
¢þ
>WENV170711215
LNFM01004028
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
44211
44136
-
Ala
CGC
[ENA]
¢þ
>WENV170711277
LNFM01004309
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16294
16369
+
Ala
CGC
[ENA]
¢þ
>WENV170733657
LULK01000001
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
29126
29201
+
Ala
CGC
[ENA]
¢þ
>WENV170760733
LUMU01000013
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
29047
29122
+
Ala
CGC
[ENA]
¢þ
>WENV170761587
LUMV01001968
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
1773
1698
-
Ala
CGC
[ENA]
¢þ
>WENV170924965
MDTG01074935
[MDTG] marine metagenome; seawater
15640
15565
-
Ala
CGC
[ENA]
¢þ
>WENV170928110
MDTG01128209
[MDTG] marine metagenome; seawater
2487
2412
-
Ala
CGC
[ENA]
¢þ
>WENV170931751
MDTG01190348
[MDTG] marine metagenome; seawater
17735
17660
-
Ala
CGC
[ENA]
¢þ
>WENV170936215
MDTG01271382
[MDTG] marine metagenome; seawater
93125
93050
-
Ala
CGC
[ENA]
¢þ
>WENV170936871
MDTG01282172
[MDTG] marine metagenome; seawater
22842
22767
-
Ala
CGC
[ENA]
¢þ
>WENV170942312
MDTG01375848
[MDTG] marine metagenome; seawater
3719
3794
+
Ala
CGC
[ENA]
¢þ
>WENV170943772
MDTG01403439
[MDTG] marine metagenome; seawater
49966
49891
-
Ala
CGC
[ENA]
¢þ
>C191081637
CP031841
Alphaproteobacteria
Breoghania sp. L-A4 [CP031841]
77920
77845
-
Ala
CGC
-
¡û
>W1911653509
QDFX01000004
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
147960
147885
-
Ala
CGC
[ENA]
¡û
>C151079670
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
2462281
2462206
-
Ala
CGC
[Ensembl]
¡û
>C161087792
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3500930
3500855
-
Ala
CGC
[Ensembl]
¡û
>W1610014763
AONG01000022
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
80366
80291
-
Ala
CGC
[ENA]
¡û
>W1610056712
BBWM01000034
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
51517
51442
-
Ala
CGC
[ENA]
¡û
>W1610724931
LMEM01000012
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
350812
350887
+
Ala
CGC
[ENA]
¡û
>W1610911630
LSHN01000057
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
51143
51068
-
Ala
CGC
[ENA]
¡û
>W1610911852
LSHS01000162
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
37292
37217
-
Ala
CGC
[ENA]
¡û
>W1610911927
LSHU01000059
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
30464
30539
+
Ala
CGC
[ENA]
¡û
>W1610983908
LWEW01000315
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
563
488
-
Ala
CGC
[ENA]
¡û
>W1610983970
LWEW01001972
Alphaproteobacteria
Erythrobacter sp. HI0038 [LWEW]
4585
4660
+
Ala
CGC
[ENA]
¡û
>W1710011654
AONG01000022
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
80366
80291
-
Ala
CGC
[ENA]
¡û
>W1710053411
BBWM01000034
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
51517
51442
-
Ala
CGC
[ENA]
¡û
>W1710609200
FXWG01000001
Alphaproteobacteria
Altererythrobacter xiamenensis [FXWG]
563575
563500
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK