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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250064 (49 seq.)
>W1711066568
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
30210
30285
+
Lys
TTT
[ENA]
¡û
>W1711095136
LTGN01000037
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
39517
39592
+
Lys
TTT
[ENA]
¡û
>W1711102607
LTNW01000004
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
6445
6370
-
Lys
TTT
[ENA]
¡û
>W1711112803
LTXS01000034
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
73068
73143
+
Lys
TTT
[ENA]
¡û
>W1711186531
LWOH01000032
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
6982
6907
-
Lys
TTT
[ENA]
¡û
>W1711187691
LWPR01000034
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
5869
5796
-
Lys
TTT
[ENA]
¡û
>W131000431
AGEM01000002
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
1231
1156
-
Lys
TTT
[ENA]
¡û
>WENV180554344
OCJN01000105
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
39786
39859
+
Lys
TTT
[ENA]
¢þ
>WENV180765494
ODIC01000006
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
19183
19110
-
Lys
TTT
[ENA]
¢þ
>WENV180878635
ODLX01001291
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
3436
3363
-
Lys
TTT
[ENA]
¢þ
>WENV180984418
ODVG01000396
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
2453
2526
+
Lys
TTT
[ENA]
¢þ
>WENV181131656
OEGD01000292
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
2352
2425
+
Lys
TTT
[ENA]
¢þ
>WENV181212420
OFBP01003449
[OFBP] metagenome; hydrothermal vent
190
264
+
Lys
TTT
[ENA]
¢þ
>WENV182628932
OJKR01000063
[OJKR] metagenome; surface
11980
12053
+
Lys
TTT
[ENA]
¢þ
>WENV182636118
OJKZ01000369
[OJKZ] metagenome; surface
3691
3618
-
Lys
TTT
[ENA]
¢þ
>WENV182640115
OJLB01000299
[OJLB] metagenome; surface
14899
14972
+
Lys
TTT
[ENA]
¢þ
>WENV182641112
OJLE01007285
[OJLE] metagenome; surface
767
694
-
Lys
TTT
[ENA]
¢þ
>WENV182641810
OJLK01001477
[OJLK] metagenome; surface
724
651
-
Lys
TTT
[ENA]
¢þ
>WENV182642192
OJLL01004800
[OJLL] metagenome; surface
802
879
+
Lys
TTT
[ENA]
¢þ
>WENV182643113
OJLS01001040
[OJLS] metagenome; surface
3413
3340
-
Lys
TTT
[ENA]
¢þ
>WENV182643151
OJLS01002261
[OJLS] metagenome; surface
595
522
-
Lys
TTT
[ENA]
¢þ
>WENV182643820
OJLW01001464
[OJLW] metagenome; surface
1051
1124
+
Lys
TTT
[ENA]
¢þ
>WENV182645141
OJLY01003136
[OJLY] metagenome; surface
4439
4512
+
Lys
TTT
[ENA]
¢þ
>WENV182645587
OJLZ01000026
[OJLZ] metagenome; surface
10692
10619
-
Lys
TTT
[ENA]
¢þ
>WENV182646364
OJMA01005326
[OJMA] metagenome; surface
638
711
+
Lys
TTT
[ENA]
¢þ
>WENV182671749
OJNM01001921
[OJNM] metagenome; surface
2492
2565
+
Lys
TTT
[ENA]
¢þ
>WENV182797783
OJTB01002137
[OJTB] human gut metagenome; human gut
134
207
+
Lys
TTT
[ENA]
¢þ
>WENV182803018
OJUH01000105
[OJUH] human gut metagenome; human gut
13959
14032
+
Lys
TTT
[ENA]
¢þ
>WENV182820762
OKAP01000069
[OKAP] human gut metagenome; human gut
28196
28123
-
Lys
TTT
[ENA]
¢þ
>WENV182835527
OKFO01000060
[OKFO] human gut metagenome; human gut
41270
41197
-
Lys
TTT
[ENA]
¢þ
>C181144760
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
2017305
2017232
-
Lys
TTT
-
¡û
>C191111906
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
2111497
2111424
-
Lys
TTT
-
¡û
>W141563967
JIAJ01000006
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
207665
207740
+
Lys
TTT
[ENA]
¡û
>W1910469840
FWYQ01000028
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
15979
16053
+
Lys
TTT
[ENA]
¡û
>C09103318
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
498317
498392
+
Lys
TTT
[Ensembl]
¡û
>W1911179033
NQMQ01000022
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
5204
5130
-
Lys
TTT
[ENA]
¡û
>W1911243343
NSGK01000010
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
58334
58408
+
Lys
TTT
[ENA]
¡û
>W1911243560
NSGO01000010
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
29405
29331
-
Lys
TTT
[ENA]
¡û
>W1911243606
NSGP01000012
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
57821
57895
+
Lys
TTT
[ENA]
¡û
>W1911596546
PNHG01000003
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
211742
211815
+
Lys
TTT
[ENA]
¡û
>W1911596598
PNHH01000004
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
293
220
-
Lys
TTT
[ENA]
¡û
>W1810187375
PKHN01000010
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
61810
61884
+
Lys
TTT
[ENA]
¡û
>W1511365568
JSEF01000017
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
5814
5741
-
Lys
TTT
[ENA]
¡û
>W1511463629
JVOW01000036
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
11974
11899
-
Lys
TTT
[ENA]
¡û
>W1511523807
JYCR01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
417581
417656
+
Lys
TTT
[ENA]
¡û
>W1511523969
JYDD01000008
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
102251
102326
+
Lys
TTT
[ENA]
¡û
>C161041044
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
2550076
2550151
+
Lys
TTT
[Ensembl]
¡û
>C131005402
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2598317
2598242
-
Lys
TTT
[Ensembl]
¡û
>W1610907138
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
30210
30285
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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