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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250065 (57 seq.)
>W1711066569
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
33824
33899
+
Glu
TTC
[ENA]
¡û
>W1711101990
LTNI01000031
Actinomycetota
Corynebacterium sp. HMSC22B11 [LTNI]
253
180
-
Glu
TTC
[ENA]
¡û
>W1711187621
LWPQ01000006
Actinomycetota
Corynebacterium sp. HMSC27B11 [LWPQ]
85123
85196
+
Glu
TTC
[ENA]
¡û
>W1711492358
MKKI01000006
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
46251
46324
+
Glu
TTC
[ENA]
¡û
>WENV180765495
ODIC01000006
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
15581
15508
-
Glu
TTC
[ENA]
¢þ
>WENV180878715
ODLX01012797
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
195
268
+
Glu
TTC
[ENA]
¢þ
>WENV180984449
ODVG01000874
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
1318
1391
+
Glu
TTC
[ENA]
¢þ
>WENV181131654
OEGD01000260
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
4246
4173
-
Glu
TTC
[ENA]
¢þ
>WENV182628933
OJKR01000063
[OJKR] metagenome; surface
15594
15667
+
Glu
TTC
[ENA]
¢þ
>WENV182636119
OJKZ01000369
[OJKZ] metagenome; surface
77
4
-
Glu
TTC
[ENA]
¢þ
>WENV182640116
OJLB01000299
[OJLB] metagenome; surface
18513
18586
+
Glu
TTC
[ENA]
¢þ
>WENV182640950
OJLE01000387
[OJLE] metagenome; surface
5878
5805
-
Glu
TTC
[ENA]
¢þ
>WENV182641779
OJLK01000428
[OJLK] metagenome; surface
790
717
-
Glu
TTC
[ENA]
¢þ
>WENV182643821
OJLW01001464
[OJLW] metagenome; surface
4665
4738
+
Glu
TTC
[ENA]
¢þ
>WENV182645588
OJLZ01000026
[OJLZ] metagenome; surface
7078
7005
-
Glu
TTC
[ENA]
¢þ
>WENV182646386
OJMA01008069
[OJMA] metagenome; surface
413
486
+
Glu
TTC
[ENA]
¢þ
>WENV182671650
OJNM01000849
[OJNM] metagenome; surface
414
487
+
Glu
TTC
[ENA]
¢þ
>WENV182797778
OJTB01001825
[OJTB] human gut metagenome; human gut
254
329
+
Glu
TTC
[ENA]
¢þ
>WENV182803019
OJUH01000105
[OJUH] human gut metagenome; human gut
17573
17648
+
Glu
TTC
[ENA]
¢þ
>WENV182820763
OKAP01000069
[OKAP] human gut metagenome; human gut
24582
24507
-
Glu
TTC
[ENA]
¢þ
>WENV182835528
OKFO01000060
[OKFO] human gut metagenome; human gut
37656
37581
-
Glu
TTC
[ENA]
¢þ
>C08003938
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
1870407
1870334
-
Glu
TTC
[Ensembl]
¡û
>C181226747
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
1188057
1187984
-
Glu
TTC
-
¡û
>W1910183463
BJNT01000008
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
6267
6194
-
Glu
TTC
[ENA]
¡û
>C09103319
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
501932
502005
+
Glu
TTC
[Ensembl]
¡û
>W1911596618
PNHH01000018
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
238
163
-
Glu
TTC
[ENA]
¡û
>W1911621417
PQNE01000002
Actinomycetota
Corynebacterium bovis WCM5 [PQNE]
8078
8005
-
Glu
TTC
[ENA]
¡û
>W1911621472
PQNF01000004
Actinomycetota
Corynebacterium bovis WCM4 [PQNF]
6381
6308
-
Glu
TTC
[ENA]
¡û
>W1911621523
PQNG01000002
Actinomycetota
Corynebacterium bovis WCM3 - SMALL [PQNG]
47082
47155
+
Glu
TTC
[ENA]
¡û
>W1911621588
PQNH01000021
Actinomycetota
Corynebacterium bovis WCM3 - LARGE [PQNH]
15714
15787
+
Glu
TTC
[ENA]
¡û
>W1911621646
PQNI01000035
Actinomycetota
Corynebacterium bovis WCM1 [PQNI]
9840
9913
+
Glu
TTC
[ENA]
¡û
>W1911621698
PQNJ01000025
Actinomycetota
Corynebacterium bovis MI 82-1021 [PQNJ]
9850
9923
+
Glu
TTC
[ENA]
¡û
>W1911621748
PQNK01000003
Actinomycetota
Corynebacterium bovis F6900 [PQNK]
6368
6295
-
Glu
TTC
[ENA]
¡û
>W1911621786
PQNL01000004
Actinomycetota
Corynebacterium bovis CUAMC1 - SMALL [PQNL]
6250
6177
-
Glu
TTC
[ENA]
¡û
>W1911621826
PQNM01000003
Actinomycetota
Corynebacterium bovis CUAMC1 - LARGE [PQNM]
6250
6177
-
Glu
TTC
[ENA]
¡û
>W1911621884
PQNN01000003
Actinomycetota
Corynebacterium bovis 17-0240 - SMALL [PQNN]
6250
6177
-
Glu
TTC
[ENA]
¡û
>W1911621936
PQNO01000020
Actinomycetota
Corynebacterium bovis 17-0240 - LARGE [PQNO]
6250
6177
-
Glu
TTC
[ENA]
¡û
>W1911621979
PQNP01000003
Actinomycetota
Corynebacterium bovis 16-3465 [PQNP]
173806
173879
+
Glu
TTC
[ENA]
¡û
>W1911622024
PQNQ01000001
Actinomycetota
Corynebacterium bovis 16-2004 [PQNQ]
235855
235928
+
Glu
TTC
[ENA]
¡û
>W1911622074
PQNR01000002
Actinomycetota
Corynebacterium bovis 16-1683 - SMALL [PQNR]
57626
57699
+
Glu
TTC
[ENA]
¡û
>W1911622131
PQNS01000007
Actinomycetota
Corynebacterium bovis 16-1683 - LARGE [PQNS]
6379
6306
-
Glu
TTC
[ENA]
¡û
>W1911622183
PQNT01000002
Actinomycetota
Corynebacterium bovis 13-1426 [PQNT]
263144
263217
+
Glu
TTC
[ENA]
¡û
>W1911622233
PQNU01000002
Actinomycetota
Corynebacterium bovis 12-5346 [PQNU]
6368
6295
-
Glu
TTC
[ENA]
¡û
>W1911622273
PQNV01000003
Actinomycetota
Corynebacterium bovis 7894 [PQNV]
17957
18030
+
Glu
TTC
[ENA]
¡û
>W1911622356
PQNW01000007
Actinomycetota
Corynebacterium bovis 4828 [PQNW]
6327
6254
-
Glu
TTC
[ENA]
¡û
>W1911622409
PQNX01000007
Actinomycetota
Corynebacterium bovis 4826 [PQNX]
166841
166914
+
Glu
TTC
[ENA]
¡û
>C151013301
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
2803239
2803166
-
Glu
TTC
[Ensembl]
¡û
>W10124088
AEAU01000109
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
174754
174827
+
Glu
TTC
[ENA]
¡û
>C11106654
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
686550
686623
+
Glu
TTC
[Ensembl]
¡û
>W11130925
AEAU01000109
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
174754
174827
+
Glu
TTC
[ENA]
¡û
>W1511523808
JYCR01000001
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
421194
421269
+
Glu
TTC
[ENA]
¡û
>W1511523970
JYDD01000008
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
105866
105941
+
Glu
TTC
[ENA]
¡û
>W11141085
AENJ01000157
Actinomycetota
Corynebacterium bovis DSM 20582 [AENJ]
22698
22771
+
Glu
TTC
[ENA]
¡û
>W1610163654
FAUH01000018
Actinomycetota
Corynebacterium variabile [FAUH]
78311
78384
+
Glu
TTC
[ENA]
¡û
>C131005321
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
620845
620918
+
Glu
TTC
[Ensembl]
¡û
>W1610907139
LSCY01000011
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
33824
33899
+
Glu
TTC
[ENA]
¡û
>W1710165321
FAUH01000018
Actinomycetota
Corynebacterium variabile [FAUH]
78311
78384
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK