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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250271 (49 seq.)
>C171038970
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
780538
780613
+
Ala
TGC
-
¡û
>C171038972
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
786146
786221
+
Ala
TGC
-
¡û
>C171038974
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
791752
791827
+
Ala
TGC
-
¡û
>C171038976
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
797360
797435
+
Ala
TGC
-
¡û
>C171039165
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2834012
2834087
+
Ala
TGC
-
¡û
>C171039167
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2839564
2839639
+
Ala
TGC
-
¡û
>C171039169
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2845097
2845172
+
Ala
TGC
-
¡û
>C015933
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
2755906
2755831
-
Ala
TGC
[Ensembl]
¡û
>C015935
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
2750324
2750249
-
Ala
TGC
[Ensembl]
¡û
>WENV180218463
OBAR01057858
[OBAR] human gut metagenome; human gut
554
479
-
Ala
TGC
[ENA]
¢þ
>WENV180292738
OBIV01599902
[OBIV] soil metagenome; Clay
241
316
+
Ala
TGC
[ENA]
¢þ
>WENV180337445
OBLG01042290
[OBLG] human gut metagenome; human gut
820
745
-
Ala
TGC
[ENA]
¢þ
>WENV180531380
OCHK01061105
[OCHK] human gut metagenome; human gut
554
479
-
Ala
TGC
[ENA]
¢þ
>WENV180539550
OCHP01044030
[OCHP] human gut metagenome; human gut
549
474
-
Ala
TGC
[ENA]
¢þ
>WENV180564031
OCLD01014929
[OCLD] human gut metagenome; human gut
302
377
+
Ala
TGC
[ENA]
¢þ
>WENV180620617
OCQB01149423
[OCQB] human gut metagenome; human gut
173
248
+
Ala
TGC
[ENA]
¢þ
>WENV180633160
OCQZ01107541
[OCQZ] human gut metagenome; human gut
181
256
+
Ala
TGC
[ENA]
¢þ
>WENV180650132
OCSK01320180
[OCSK] human gut metagenome; human gut
82
157
+
Ala
TGC
[ENA]
¢þ
>WENV180828541
ODKA01012575
[ODKA] human metagenome; G_DNA_Stool
177
252
+
Ala
TGC
[ENA]
¢þ
>WENV181162086
OEIM01080938
[OEIM] human gut metagenome; human gut
179
254
+
Ala
TGC
[ENA]
¢þ
>WENV181772917
OGRD01035463
[OGRD] human gut metagenome; faeces
651
576
-
Ala
TGC
[ENA]
¢þ
>WENV181895633
OGXR01017983
[OGXR] human gut metagenome; faeces
177
252
+
Ala
TGC
[ENA]
¢þ
>WENV182004297
OHBD01034678
[OHBD] human gut metagenome; feces
179
254
+
Ala
TGC
[ENA]
¢þ
>WENV182028860
OHCP01019643
[OHCP] human gut metagenome; feces
160
235
+
Ala
TGC
[ENA]
¢þ
>WENV182087768
OHGW01029780
[OHGW] human gut metagenome; feces
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV182102089
OHHU01014778
[OHHU] human gut metagenome; feces
179
254
+
Ala
TGC
[ENA]
¢þ
>WENV182177111
OHNJ01014661
[OHNJ] human gut metagenome; feces
891
816
-
Ala
TGC
[ENA]
¢þ
>WENV182192679
OHOZ01035002
[OHOZ] human gut metagenome; feces
555
480
-
Ala
TGC
[ENA]
¢þ
>WENV182236335
OHRU01007387
[OHRU] human gut metagenome; feces
181
256
+
Ala
TGC
[ENA]
¢þ
>WENV182615150
OJKC01001492
[OJKC] metagenome; faeces
362
437
+
Ala
TGC
[ENA]
¢þ
>WENV182620372
OJKI01003675
[OJKI] metagenome; faeces
819
894
+
Ala
TGC
[ENA]
¢þ
>WENV182632175
OJKW01048336
[OJKW] metagenome; faeces
374
449
+
Ala
TGC
[ENA]
¢þ
>WENV182635846
OJKY01137550
[OJKY] metagenome; faeces
26
101
+
Ala
TGC
[ENA]
¢þ
>WENV182639958
OJLA01159118
[OJLA] metagenome; faeces
62
137
+
Ala
TGC
[ENA]
¢þ
>WENV182868099
OKRS01001736
[OKRS] human gut metagenome; faeces
13688
13613
-
Ala
TGC
[ENA]
¢þ
>WENV182893047
OKSI01035440
[OKSI] human gut metagenome; feces
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV182919505
OKTX01020384
[OKTX] human gut metagenome; feces
948
873
-
Ala
TGC
[ENA]
¢þ
>WENV183275859
OLRZ01000548
[OLRZ] human gut metagenome; faeces
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV183505747
OMGX01025836
[OMGX] human gut metagenome; human gut
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV170003293
AGTN01288455
[AGTN] bioreactor metagenome; poplar biomass
165
240
+
Ala
TGC
[ENA]
¢þ
>WENV170056595
CDZG01007953
[CDZG] gut metagenome; human stools
162
237
+
Ala
TGC
[ENA]
¢þ
>WENV170657681
JTFP01009220
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
750
675
-
Ala
TGC
[ENA]
¢þ
>WENV170692344
LGOV01003783
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
2440
2365
-
Ala
TGC
[ENA]
¢þ
>WENV170694563
LGVD01099443
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
123
198
+
Ala
TGC
[ENA]
¢þ
>WENV170695224
LGVE01061607
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
735
660
-
Ala
TGC
[ENA]
¢þ
>WENV170696801
LGVF01050564
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2182
2107
-
Ala
TGC
[ENA]
¢þ
>W1910805140
MTKO01000043
Thermodesulfobacteriota
Candidatus Electrothrix aarhusensis aarhusiensis [MTKO]
2131
2206
+
Ala
TGC
[ENA]
¡û
>W121036494
AHMC01000022
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
54140
54065
-
Ala
TGC
[ENA]
¡û
>W121036500
AHMC01000024
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
217957
217882
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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