This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250531 (48 seq.)
>W1711092325
LTDX01000072
Bacillota
Lactobacillus acetotolerans [LTDX]
9772
9697
-
His
GTG
[ENA]
¡û
>C171108201
CP020457
Bacillota
Lactobacillus amylolyticus L6 [CP020457]
1152110
1152035
-
His
GTG
-
¡û
>W141228290
BALU01000020
Bacillota
Lactobacillus kitasatonis JCM 1039 [BALU]
5709
5784
+
His
GTG
[ENA]
¡û
>W141228938
BAMG01000052
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985 [BAMG]
177
252
+
His
GTG
[ENA]
¡û
>WENV183150529
OLOP01001732
[OLOP] human gut metagenome; faeces
4298
4371
+
His
GTG
[ENA]
¢þ
>WENV183182853
OLPK01001697
[OLPK] human gut metagenome; faeces
3211
3284
+
His
GTG
[ENA]
¢þ
>WENV183237291
OLQY01000170
[OLQY] human gut metagenome; faeces
74892
74965
+
His
GTG
[ENA]
¢þ
>WENV183263870
OLRR01002152
[OLRR] human gut metagenome; faeces
1776
1849
+
His
GTG
[ENA]
¢þ
>WENV183606224
OODN01001064
[OODN] human gut metagenome; human gut
1861
1934
+
His
GTG
[ENA]
¢þ
>C181027690
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
672851
672778
-
His
GTG
-
¡û
>C191081395
CP031835
Bacillota
Lactobacillus amylolyticus L5 [CP031835]
1145055
1144982
-
His
GTG
-
¡û
>W09123204
ACGU01000006
Bacillota
Lactobacillus ultunensis DSM 16047 [ACGU]
177
252
+
His
GTG
[ENA]
¡û
>W09123231
ACGU01000033
Bacillota
Lactobacillus ultunensis DSM 16047 [ACGU]
38699
38774
+
His
GTG
[ENA]
¡û
>W09127608
ACLD01000046
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
38700
38775
+
His
GTG
[ENA]
¡û
>W09127670
ACLD01000156
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
425
350
-
His
GTG
[ENA]
¡û
>W1910871308
NCWZ01000042
Bacillota
Lactobacillus kefiranofaciens KR [NCWZ]
9241
9168
-
His
GTG
[ENA]
¡û
>W1911631513
PUFF01000021
Bacillota
Lactobacillus amylolyticus DSM 11664 [PUFF]
10095
10022
-
His
GTG
[ENA]
¡û
>W1810815347
QSAX01000044
Bacillota
Lactobacillus amylovorus AF08-3 [QSAX]
5704
5777
+
His
GTG
[ENA]
¡û
>C151003267
AP014808
Bacillota
Lactobacillus acetotolerans NBRC 13120 [AP014808]
480861
480936
+
His
GTG
[Ensembl]
¡û
>W1510072889
CDLD01000007
Bacillota
Lactobacillus sp. OTU4228 sp. [CDLD]
4708
4783
+
His
GTG
[ENA]
¡û
>W10116655
ADNY01000058
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
2840
2915
+
His
GTG
[ENA]
¡û
>C11111936
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
458220
458295
+
His
GTG
[Ensembl]
¡û
>C11112031
CP002609
Bacillota
Lactobacillus amylovorus GRL1118 [CP002609]
421410
421485
+
His
GTG
[Ensembl]
¡û
>C11112090
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
458471
458546
+
His
GTG
[Ensembl]
¡û
>C11112995
CP002764
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens ZW3 [CP002764]
132757
132832
+
His
GTG
[Ensembl]
¡û
>W11121324
ADNY01000058
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
2840
2915
+
His
GTG
[ENA]
¡û
>W1511580698
LARO01000034
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
9394
9319
-
His
GTG
[ENA]
¡û
>C161047017
CP012890
Bacillota
Lactobacillus gallinarum HFD4 [CP012890]
92820
92745
-
His
GTG
[Ensembl]
¡û
>W1610031791
AYZC01000047
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
9881
9806
-
His
GTG
[ENA]
¡û
>W1610032844
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3186
3261
+
His
GTG
[ENA]
¡û
>W1610035454
AZEM01000126
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [AZEM]
9242
9167
-
His
GTG
[ENA]
¡û
>W1610035593
AZEP01000032
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
567
642
+
His
GTG
[ENA]
¡û
>W1610036811
AZFO01000021
Bacillota
Lactobacillus ultunensis DSM 16047 [AZFO]
38722
38797
+
His
GTG
[ENA]
¡û
>W1610037132
AZFU01000045
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
9277
9202
-
His
GTG
[ENA]
¡û
>W1610037756
AZGG01000050
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
208
283
+
His
GTG
[ENA]
¡û
>W1610044588
BBAQ01000045
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
2743
2818
+
His
GTG
[ENA]
¡û
>W1610045761
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
9864
9789
-
His
GTG
[ENA]
¡û
>W1610926363
LTDX01000072
Bacillota
Lactobacillus acetotolerans [LTDX]
9772
9697
-
His
GTG
[ENA]
¡û
>W1710028718
AYZC01000047
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [AYZC]
9881
9806
-
His
GTG
[ENA]
¡û
>W1710030175
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3186
3261
+
His
GTG
[ENA]
¡û
>W1710032493
AZEM01000126
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [AZEM]
9242
9167
-
His
GTG
[ENA]
¡û
>W1710032632
AZEP01000032
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
567
642
+
His
GTG
[ENA]
¡û
>W1710033850
AZFO01000021
Bacillota
Lactobacillus ultunensis DSM 16047 [AZFO]
38722
38797
+
His
GTG
[ENA]
¡û
>W1710034171
AZFU01000045
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
9277
9202
-
His
GTG
[ENA]
¡û
>W1710034795
AZGG01000050
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
208
283
+
His
GTG
[ENA]
¡û
>W1710041686
BBAQ01000045
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
2743
2818
+
His
GTG
[ENA]
¡û
>W1710042602
BBBU01000043
Bacillota
Lactobacillus acetotolerans DSM 20749 = JCM 3825 [BBBU]
9864
9789
-
His
GTG
[ENA]
¡û
>W1710509312
FMXC01000044
Bacillota
Lactobacillus kefiranofaciens [FMXC]
9175
9100
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK