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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251069 (65 seq.)
>W1710853388
LLWP01000005
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
159518
159445
-
Gly
TCC
[ENA]
¡û
>W1710893230
LNEN01000323
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
3876
3949
+
Gly
TCC
[ENA]
¡û
>W1710894205
LNFR01000030
Bacteroidota
Bacteroidetes bacterium OLB12 [LNFR]
1900
1825
-
Gly
TCC
[ENA]
¡û
>W131065707
ANNU01000035
Bacteroidota
Nafulsella turpanensis ZLM-10 [ANNU]
33915
33840
-
Gly
TCC
[ENA]
¡û
>W131087892
AODQ01000012
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
34821
34748
-
Gly
TCC
[ENA]
¡û
>W1711167097
LVWA01000010
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
166642
166715
+
Gly
TCC
[ENA]
¡û
>W1711220390
LXQK01000154
Bacteroidota
Marivirga sp. ANT-B6 [LXQK]
8711
8638
-
Gly
TCC
[ENA]
¡û
>W1711606581
MORL01000005
Bacteroidota
Arsenicibacter rosenii [MORL]
179695
179620
-
Gly
TCC
[ENA]
¡û
>C171037565
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
871138
871063
-
Gly
TCC
-
¡û
>W131167785
ARDO01000001
Bacteroidota
Pontibacter roseus DSM 17521 [ARDO]
789562
789637
+
Gly
TCC
[ENA]
¡û
>WENV180018904
FTBA01000263
[FTBA] metagenome; soil
7737
7810
+
Gly
TCC
[ENA]
¢þ
>WENV180039402
LLBY010064026
[LLBY] soil metagenome; soil from tomato rhizosphere
18752
18825
+
Gly
TCC
[ENA]
¢þ
>WENV180356519
OBNK01042545
[OBNK] sediment metagenome; sediment
171
98
-
Gly
TCC
[ENA]
¢þ
>WENV180591547
OCOV01043251
[OCOV] marine metagenome; ENVO:01000301
266
341
+
Gly
TCC
[ENA]
¢þ
>WENV180591765
OCOV01096734
[OCOV] marine metagenome; ENVO:01000301
297
370
+
Gly
TCC
[ENA]
¢þ
>WENV180691325
OCZS010101233
[OCZS] soil metagenome; soil
171
98
-
Gly
TCC
[ENA]
¢þ
>WENV181191169
OEPS010032261
[OEPS] soil metagenome; soil
280
207
-
Gly
TCC
[ENA]
¢þ
>W141152215
AXBP01000020
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
180213
180286
+
Gly
TCC
[ENA]
¡û
>WENV181846594
OGVX01060776
[OGVX] freshwater metagenome; freshwater
384
311
-
Gly
TCC
[ENA]
¢þ
>WENV181854667
OGWK01010755
[OGWK] freshwater metagenome; freshwater
288
215
-
Gly
TCC
[ENA]
¢þ
>WENV183092751
OLLK01000184
[OLLK] soil metagenome; soil
1191
1118
-
Gly
TCC
[ENA]
¢þ
>WENV183703750
PDVJ01041471
[PDVJ] alkali sediment metagenome; glacial lake sediment
763
690
-
Gly
TCC
[ENA]
¢þ
>WENV183725457
PJQF01000058
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
26072
25999
-
Gly
TCC
[ENA]
¢þ
>WENV183732351
PJTX01000041
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
5805
5732
-
Gly
TCC
[ENA]
¢þ
>WENV183735097
PJUA01000893
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
7039
7112
+
Gly
TCC
[ENA]
¢þ
>WENV170011324
APMI01055975
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2372
2447
+
Gly
TCC
[ENA]
¢þ
>WENV170713277
LNFM01027763
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2958
3031
+
Gly
TCC
[ENA]
¢þ
>WENV170713307
LNFM01028506
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1738
1663
-
Gly
TCC
[ENA]
¢þ
>WENV171003869
NNBV01003033
[NNBV] plant metagenome; symbiotic tissue sample KVS11
5468
5541
+
Gly
TCC
[ENA]
¢þ
>C181094358
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5219981
5220054
+
Gly
TCC
-
¡û
>C191018698
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
4471530
4471603
+
Gly
TCC
-
¡û
>C191088391
CP032382
Bacteroidota
Chryseolinea soli KIS68-18 [CP032382]
2783549
2783622
+
Gly
TCC
-
¡û
>C191222341
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
721522
721449
-
Gly
TCC
-
¡û
>W1910129048
BHXQ01000004
Bacteroidota
Chryseotalea sanaruensis Ys [BHXQ]
215728
215801
+
Gly
TCC
[ENA]
¡û
>W1910378058
FUKX01000027
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
13889
13816
-
Gly
TCC
[ENA]
¡û
>W1910548594
FZOQ01000001
Bacteroidota
Pontibacter ummariensis NKM1 [FZOQ]
22308
22381
+
Gly
TCC
[ENA]
¡û
>W1910664359
MCAQ01000004
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
28492
28419
-
Gly
TCC
[ENA]
¡û
>W1911647660
QAJQ01000014
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
86026
85951
-
Gly
TCC
[ENA]
¡û
>W1911749371
QWGE01000004
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
178556
178629
+
Gly
TCC
[ENA]
¡û
>W1810173084
PJMU01000002
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
543489
543416
-
Gly
TCC
[ENA]
¡û
>W1810368041
PVZE01000001
Bacteroidota
Pontibacter ummariensis NKM1 [PVZE]
22308
22381
+
Gly
TCC
[ENA]
¡û
>W1810477214
QAOQ01000002
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
220465
220392
-
Gly
TCC
[ENA]
¡û
>W1810572855
QEKI01000001
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
356086
356013
-
Gly
TCC
[ENA]
¡û
>W1810594601
QGDC01000001
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
485586
485513
-
Gly
TCC
[ENA]
¡û
>W1810597102
QGHA01000004
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
235677
235750
+
Gly
TCC
[ENA]
¡û
>W1810676156
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
172196
172269
+
Gly
TCC
[ENA]
¡û
>W1810702009
QMFY01000011
Bacteroidota
Pseudochryseolinea flava SDU1-6 [QMFY]
49015
48942
-
Gly
TCC
[ENA]
¡û
>W1810761072
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
544577
544650
+
Gly
TCC
[ENA]
¡û
>W1810789496
QRGR01000010
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
226047
225974
-
Gly
TCC
[ENA]
¡û
>W1810917799
QWDE01000003
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
381152
381079
-
Gly
TCC
[ENA]
¡û
>C151055984
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
1954816
1954889
+
Gly
TCC
[Ensembl]
¡û
>ENV09003875
ADGO01201259
Compost metagenome contig00001
446
373
-
Gly
TCC
[ENA]
¡û
>C161076981
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
2494186
2494261
+
Gly
TCC
-
¡û
>W121084763
AKIS01000030
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
1317
1242
-
Gly
TCC
[ENA]
¡û
>WENV006043
AACY020167378
Marine microbial communities from Global Ocean Sampling (GOS)
969
1044
+
Gly
TCC
[ENA]
>W1610716512
LLWP01000005
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
159518
159445
-
Gly
TCC
[ENA]
¡û
>W1610753496
LNEN01000323
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
3876
3949
+
Gly
TCC
[ENA]
¡û
>W1610754471
LNFR01000030
Bacteroidota
Bacteroidetes bacterium OLB12 [LNFR]
1900
1825
-
Gly
TCC
[ENA]
¡û
>W1611004862
LXQK01000154
Bacteroidota
Marivirga sp. ANT-B6 [LXQK]
8711
8638
-
Gly
TCC
[ENA]
¡û
>W1710562167
FOOT01000004
Bacteroidota
Pontibacter chinhatensis [FOOT]
355352
355279
-
Gly
TCC
[ENA]
¡û
>W1710579012
FPCA01000003
Bacteroidota
Pontibacter akesuensis [FPCA]
658672
658597
-
Gly
TCC
[ENA]
¡û
>W1710585801
FQWQ01000001
Bacteroidota
Chryseolinea serpens [FQWQ]
2905628
2905555
-
Gly
TCC
[ENA]
¡û
>W1710597869
FTNM01000001
Bacteroidota
Pontibacter lucknowensis [FTNM]
599821
599746
-
Gly
TCC
[ENA]
¡û
>W1710600019
FTPP01000002
Bacteroidota
Pontibacter indicus [FTPP]
788650
788725
+
Gly
TCC
[ENA]
¡û
>W1710604228
FUZU01000002
Bacteroidota
Ohtaekwangia koreensis [FUZU]
1267168
1267241
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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