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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251202 (80 seq.)
>W1710808947
LKDZ01000053
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
43021
43096
+
Thr
TGT
[ENA]
¡û
>W1710860144
LMCQ01000020
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
98089
98164
+
Thr
TGT
[ENA]
¡û
>W1710862458
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
109530
109605
+
Thr
TGT
[ENA]
¡û
>W1710863066
LMEV01000002
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
108465
108390
-
Thr
TGT
[ENA]
¡û
>W1710870514
LMKO01000022
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
227668
227593
-
Thr
TGT
[ENA]
¡û
>W1711074189
LSJH01000549
Betaproteobacteria
Xylophilus ampelinus [LSJH]
12827
12752
-
Thr
TGT
[ENA]
¡û
>W1711123803
LUJJ01000005
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
30321
30246
-
Thr
TGT
[ENA]
¡û
>W1711143346
LVHG01000026
Betaproteobacteria
Variovorax paradoxus [LVHG]
46434
46359
-
Thr
TGT
[ENA]
¡û
>W1711386493
MEFM01000014
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
224328
224253
-
Thr
TGT
[ENA]
¡û
>W1711387481
MEGR01000019
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
88550
88475
-
Thr
TGT
[ENA]
¡û
>W1711506638
MKWO01000046
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
224320
224245
-
Thr
TGT
[ENA]
¡û
>W131174623
ARIP01000049
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
69700
69625
-
Thr
TGT
[ENA]
¡û
>W131180347
ARNA01000047
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
344945
344870
-
Thr
TGT
[ENA]
¡û
>WENV180291852
OBIV01199663
[OBIV] soil metagenome; Clay
19
94
+
Thr
TGT
[ENA]
¢þ
>WENV183731248
PJTS01026146
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
390
465
+
Thr
TGT
[ENA]
¢þ
>WENV183735239
PJUA01005059
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
678
603
-
Thr
TGT
[ENA]
¢þ
>WENV183735580
PJUB01000082
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1548
1623
+
Thr
TGT
[ENA]
¢þ
>WENV183736214
PJUC01000149
[PJUC] soil metagenome; Soil enriched on filter paper
247
322
+
Thr
TGT
[ENA]
¢þ
>WENV183741576
PJUG01000083
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
6777
6852
+
Thr
TGT
[ENA]
¢þ
>WENV183742016
PJUH01000056
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
74140
74065
-
Thr
TGT
[ENA]
¢þ
>WENV170559893
CXWL01168429
[CXWL] groundwater metagenome; biofilm material
54
129
+
Thr
TGT
[ENA]
¢þ
>WENV170625137
FUWD013192376
[FUWD] metagenome; unknown
3906
3831
-
Thr
TGT
[ENA]
¢þ
>WENV170633393
FUWD013395544
[FUWD] metagenome; unknown
3906
3831
-
Thr
TGT
[ENA]
¢þ
>WENV171003312
NNBT01004273
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
241
166
-
Thr
TGT
[ENA]
¢þ
>WENV171003630
NNBU01001077
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
1035
960
-
Thr
TGT
[ENA]
¢þ
>WENV171003764
NNBV01000689
[NNBV] plant metagenome; symbiotic tissue sample KVS11
41464
41389
-
Thr
TGT
[ENA]
¢þ
>C181078459
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
1371694
1371769
+
Thr
TGT
-
¡û
>C181159402
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
2791545
2791470
-
Thr
TGT
-
¡û
>W09119925
ACEE01000011
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
132577
132652
+
Thr
TGT
[ENA]
¡û
>W141816805
JQKD01000026
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
30586
30661
+
Thr
TGT
[ENA]
¡û
>C141002542
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
1386454
1386529
+
Thr
TGT
[Ensembl]
¡û
>W1910792839
MRCN01000018
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
88946
89021
+
Thr
TGT
[ENA]
¡û
>W1910889010
NESI01000001
Betaproteobacteria
Limnohabitans sp. B9-3 [NESI]
414168
414093
-
Thr
TGT
[ENA]
¡û
>W1910889261
NESO01000001
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
543163
543088
-
Thr
TGT
[ENA]
¡û
>C09111091
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
1317852
1317927
+
Thr
TGT
[Ensembl]
¡û
>W1911496705
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
5907162
5907087
-
Thr
TGT
[ENA]
¡û
>W1911647360
QAJK01000100
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
35708
35633
-
Thr
TGT
[ENA]
¡û
>W1911709209
QPIB01000007
Betaproteobacteria
Xenophilus sp. E41 [QPIB]
192666
192741
+
Thr
TGT
[ENA]
¡û
>W1911775336
QXMN01000062
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
14990
14915
-
Thr
TGT
[ENA]
¡û
>W1810072223
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
4505205
4505280
+
Thr
TGT
[ENA]
¡û
>SRA1002959
SRR002326.125502
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
187
112
-
Thr
TGT
[SRA]
>SRA1003371
SRR002326.416202
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
188
113
-
Thr
TGT
[SRA]
>W1810192717
PKMT01000002
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
839911
839836
-
Thr
TGT
[ENA]
¡û
>W1810486662
QAYA01000003
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
140352
140277
-
Thr
TGT
[ENA]
¡û
>W1810577509
QEOH01000002
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
761525
761450
-
Thr
TGT
[ENA]
¡û
>W1810672022
QJTC01000008
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
128476
128551
+
Thr
TGT
[ENA]
¡û
>W1810672537
QJTM01000004
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
140352
140277
-
Thr
TGT
[ENA]
¡û
>W1810676101
QKLT01000003
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
140352
140277
-
Thr
TGT
[ENA]
¡û
>W1810682462
QKUE01000002
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
495623
495548
-
Thr
TGT
[ENA]
¡û
>C11123573
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
1437297
1437372
+
Thr
TGT
[Ensembl]
¡û
>W1511508925
JXQQ01000027
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
118846
118921
+
Thr
TGT
[ENA]
¡û
>W1511554990
JZWI01000009
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
21211
21286
+
Thr
TGT
[ENA]
¡û
>W1610072153
BCUS01000026
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
44879
44954
+
Thr
TGT
[ENA]
¡û
>W1610072193
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
1437227
1437152
-
Thr
TGT
[ENA]
¡û
>W1610072235
BCUU01000002
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
82394
82469
+
Thr
TGT
[ENA]
¡û
>W121084981
AKIW01000089
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
12275
12200
-
Thr
TGT
[ENA]
¡û
>W1610722490
LMCQ01000020
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
98089
98164
+
Thr
TGT
[ENA]
¡û
>W1610724804
LMEK01000001
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
109530
109605
+
Thr
TGT
[ENA]
¡û
>W1610725412
LMEV01000002
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
108465
108390
-
Thr
TGT
[ENA]
¡û
>W1610732860
LMKO01000022
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
227668
227593
-
Thr
TGT
[ENA]
¡û
>W1610913494
LSJH01000549
Betaproteobacteria
Xylophilus ampelinus [LSJH]
12827
12752
-
Thr
TGT
[ENA]
¡û
>W1610954354
LVHG01000026
Betaproteobacteria
Variovorax paradoxus [LVHG]
46434
46359
-
Thr
TGT
[ENA]
¡û
>W1710069355
BCUS01000026
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
44879
44954
+
Thr
TGT
[ENA]
¡û
>W1710069395
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
1437227
1437152
-
Thr
TGT
[ENA]
¡û
>W1710069437
BCUU01000002
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
82394
82469
+
Thr
TGT
[ENA]
¡û
>W1710506210
FMUJ01000006
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
317348
317273
-
Thr
TGT
[ENA]
¡û
>W1710517958
FNDR01000008
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
245224
245299
+
Thr
TGT
[ENA]
¡û
>W1710530008
FNOL01000001
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
284035
284110
+
Thr
TGT
[ENA]
¡û
>W1710531348
FNPM01000001
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
552288
552213
-
Thr
TGT
[ENA]
¡û
>W1710538127
FNUI01000001
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
822738
822813
+
Thr
TGT
[ENA]
¡û
>W1710539542
FNVM01000001
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
54836
54761
-
Thr
TGT
[ENA]
¡û
>W1710542687
FNZJ01000001
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
630789
630864
+
Thr
TGT
[ENA]
¡û
>W1710545283
FOBJ01000003
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
108651
108576
-
Thr
TGT
[ENA]
¡û
>W1710554293
FOII01000002
Betaproteobacteria
Variovorax sp. OV084 [FOII]
563660
563585
-
Thr
TGT
[ENA]
¡û
>W1710557127
FOKS01000001
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
54844
54769
-
Thr
TGT
[ENA]
¡û
>W1710558126
FOLP01000001
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
630789
630864
+
Thr
TGT
[ENA]
¡û
>W1710562272
FOOV01000009
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
54845
54770
-
Thr
TGT
[ENA]
¡û
>W1710572121
FOWL01000003
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
17378
17303
-
Thr
TGT
[ENA]
¡û
>W1710573303
FOXJ01000005
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
200090
200165
+
Thr
TGT
[ENA]
¡û
>W1710597097
FTMY01000008
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
124236
124161
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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