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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251343 (50 seq.)
>W1710856326
LLZI01000019
Actinomycetota
Streptomyces sp. NRRL F-4489 [LLZI]
16698
16771
+
Ala
CGC
[ENA]
¡û
>W1711326561
MBFJ01000040
Actinomycetota
Jiangella alba [MBFJ]
43346
43421
+
Ala
CGC
[ENA]
¡û
>W131224326
AUCS01000002
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
617155
617080
-
Ala
CGC
[ENA]
¡û
>W1711793210
MWLL01000016
Actinomycetota
Kineosporia sp. R_H_3 [MWLL]
235
308
+
Ala
CGC
[ENA]
¡û
>W1711793313
MWLN01000107
Actinomycetota
Kineosporia sp. A_224 A 224 [MWLN]
112343
112268
-
Ala
CGC
[ENA]
¡û
>C171010802
CP011533
Actinomycetota
Streptomyces noursei ATCC 11455 [CP011533]
5506997
5507072
+
Ala
CGC
-
¡û
>C171109602
CP020569
Actinomycetota
Streptomyces gilvosporeus F607 [CP020569]
4010703
4010628
-
Ala
CGC
-
¡û
>W131168636
AREE01000004
Actinomycetota
Streptomyces sp. MspMP-M5 [AREE]
73202
73129
-
Ala
CGC
[ENA]
¡û
>W131181539
AROY01001840
Actinomycetota
Streptomyces noursei CCRC 11814 [AROY]
2162
2235
+
Ala
CGC
[ENA]
¡û
>w003990
AAEF02000019
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
590
665
+
Ala
CGC
[ENA]
¡û
>WENV180691519
OCZS010144566
[OCZS] soil metagenome; soil
203
276
+
Ala
CGC
[ENA]
¢þ
>WENV181311403
OFJB01001679
[OFJB] sludge metagenome; sludge
1216
1141
-
Ala
CGC
[ENA]
¢þ
>WENV181401873
OFTX01012810
[OFTX] sludge metagenome; sludge
758
684
-
Ala
CGC
[ENA]
¢þ
>W141153043
AXDB02000017
Actinomycetota
Streptomyces noursei PD-1 [AXDB]
50517
50590
+
Ala
CGC
[ENA]
¡û
>C08005701
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
3243982
3244057
+
Ala
CGC
[Ensembl]
¡û
>WENV183668867
ORJL010781410
[ORJL] groundwater metagenome; groundwater
2266
2339
+
Ala
CGC
[ENA]
¢þ
>WENV183671596
ORJL011078433
[ORJL] groundwater metagenome; groundwater
329
404
+
Ala
CGC
[ENA]
¢þ
>WENV183706739
PDWI01005365
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1551
1476
-
Ala
CGC
[ENA]
¢þ
>WENV183709269
PDWI01026266
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19
94
+
Ala
CGC
[ENA]
¢þ
>WENV183717635
PDWJ01001262
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
33922
33847
-
Ala
CGC
[ENA]
¢þ
>WENV183749752
PPFU01208824
[PPFU] hypolithon metagenome; Antarctic Hypolithon
67
141
+
Ala
CGC
[ENA]
¢þ
>WENV170009289
APMI01000036
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5984
5911
-
Ala
CGC
[ENA]
¢þ
>WENV170961812
MLJW01001682
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1391
1466
+
Ala
CGC
[ENA]
¢þ
>C181127695
CP026094
Actinomycetota
Streptomyces noursei CK-15 [CP026094]
4075226
4075153
-
Ala
CGC
-
¡û
>C181200530
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2356789
2356715
-
Ala
CGC
-
¡û
>C181225152
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
2464436
2464361
-
Ala
CGC
-
¡û
>W141767148
JOEL01000015
Actinomycetota
Streptomyces celluloflavus [JOEL]
43608
43681
+
Ala
CGC
[ENA]
¡û
>W1910128958
BHXC01000006
Actinomycetota
Streptomyces noursei NBRC 14147 [BHXC]
4216179
4216106
-
Ala
CGC
[ENA]
¡û
>W1910619462
LJSN01000002
Actinomycetota
Streptomyces noursei JCM 4701 [LJSN]
4487924
4487850
-
Ala
CGC
[ENA]
¡û
>W1910873839
NDXL01000002
Actinomycetota
Streptomyces kasugaensis BCRC 12349 [NDXL]
1489759
1489832
+
Ala
CGC
[ENA]
¡û
>W1911083816
NNBP01000022
Actinomycetota
Streptomyces sp. CB02959 [NNBP]
176174
176100
-
Ala
CGC
[ENA]
¡û
>W1911738065
QUAL01000183
Actinomycetota
Jiangella rhizosphaerae NEAU-YY265 [QUAL]
11554
11629
+
Ala
CGC
[ENA]
¡û
>W1911813380
QZEZ01000001
Actinomycetota
Vallicoccus soli YIM 75000 [QZEZ]
490246
490319
+
Ala
CGC
[ENA]
¡û
>W1810223819
POTW01000020
Actinomycetota
Jiangella anatolica GTF31 [POTW]
64434
64509
+
Ala
CGC
[ENA]
¡û
>W1810368122
PVZF01000009
Actinomycetota
Kineococcus rhizosphaerae DSM 19711 [PVZF]
150670
150596
-
Ala
CGC
[ENA]
¡û
>W1810898902
QVAI01000014
Actinomycetota
Jiangella endophytica KE2-3 [QVAI]
94528
94455
-
Ala
CGC
[ENA]
¡û
>C151005140
CP003987
Actinomycetota
Streptomyces sp. 769 [CP003987]
5664656
5664731
+
Ala
CGC
[Ensembl]
¡û
>C151013683
CP006871
Actinomycetota
Streptomyces noursei ZPM [CP006871]
4432537
4432464
-
Ala
CGC
[Ensembl]
¡û
>C151028706
CP007574
Actinomycetota
Streptomyces noursei NK660 [CP007574]
4142011
4141938
-
Ala
CGC
[Ensembl]
¡û
>C10112159
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
6088659
6088734
+
Ala
CGC
[Ensembl]
¡û
>W1511348394
JRKI01000006
Actinomycetota
Streptomyces natalensis ATCC 27448 [JRKI]
66584
66509
-
Ala
CGC
[ENA]
¡û
>W1511366957
JSFP01000138
Actinomycetota
Streptomyces sp. CT34 [JSFP]
11023
10948
-
Ala
CGC
[ENA]
¡û
>W1511518854
JXYI02000085
Actinomycetota
Streptomyces ahygroscopicus subsp. wuyiensis CK-15 [JXYI]
357350
357423
+
Ala
CGC
[ENA]
¡û
>W1511690026
LFXL01000043
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
1807
1734
-
Ala
CGC
[ENA]
¡û
>W1610054706
BBUY01000008
Actinomycetota
Streptomyces sp. NBRC 110611 [BBUY]
196335
196262
-
Ala
CGC
[ENA]
¡û
>W121124427
BAFE01000056
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
97846
97771
-
Ala
CGC
[ENA]
¡û
>W1610718707
LLZI01000019
Actinomycetota
Streptomyces sp. NRRL F-4489 [LLZI]
16698
16771
+
Ala
CGC
[ENA]
¡û
>W1710051405
BBUY01000008
Actinomycetota
Streptomyces sp. NBRC 110611 [BBUY]
196335
196262
-
Ala
CGC
[ENA]
¡û
>W1710555137
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
542534
542609
+
Ala
CGC
[ENA]
¡û
>W1710590950
FRBK01000002
Actinomycetota
Streptomyces yunnanensis [FRBK]
366789
366864
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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