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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251610 (119 seq.)
>W1710785200
LJHQ01000066
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
2220
2295
+
Ala
TGC
[ENA]
¡û
>W1710785495
LJHX01000075
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
3555
3630
+
Ala
TGC
[ENA]
¡û
>W1710796663
LJSH01000003
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
426442
426517
+
Ala
TGC
[ENA]
¡û
>W1710869465
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
282474
282399
-
Ala
TGC
[ENA]
¡û
>W1711069429
LSFP01000022
Alphaproteobacteria
Zymomonas mobilis [LSFP]
3190
3115
-
Ala
TGC
[ENA]
¡û
>W1711072969
LSIB01000190
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
41677
41602
-
Ala
TGC
[ENA]
¡û
>C171049956
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
1346279
1346354
+
Ala
TGC
-
¡û
>C171049996
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
243986
243911
-
Ala
TGC
-
¡û
>C171075883
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
3229450
3229525
+
Ala
TGC
-
¡û
>C171075898
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
604902
604827
-
Ala
TGC
-
¡û
>C171115137
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1399290
1399365
+
Ala
TGC
-
¡û
>C171115140
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1416135
1416210
+
Ala
TGC
-
¡û
>C171115146
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1698695
1698770
+
Ala
TGC
-
¡û
>W131046835
AMSR01000039
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
2168
2243
+
Ala
TGC
[ENA]
¡û
>W131058808
ANFY01000003
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
291481
291556
+
Ala
TGC
[ENA]
¡û
>W131160242
AQWK01000037
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
2023
2098
+
Ala
TGC
[ENA]
¡û
>W131216109
ATVO01000004
Alphaproteobacteria
Sandarakinorhabdus limnophila DSM 17366 [ATVO]
90997
90922
-
Ala
TGC
[ENA]
¡û
>W131237269
AUNU01000041
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-N14 [AUNU]
2277
2352
+
Ala
TGC
[ENA]
¡û
>W131237393
AUOJ01000135
Alphaproteobacteria
Bradyrhizobium sp. JGI 0001002-A22 [AUOJ]
959
1034
+
Ala
TGC
[ENA]
¡û
>C027937
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1915322
1915247
-
Ala
TGC
[Ensembl]
¡û
>C027940
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1901472
1901397
-
Ala
TGC
[Ensembl]
¡û
>C027946
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1616300
1616225
-
Ala
TGC
[Ensembl]
¡û
>WENV180282442
OBIC01000004
[OBIC] beach sand metagenome; beach sand
148037
148112
+
Ala
TGC
[ENA]
¢þ
>WENV180285661
OBID01605057
[OBID] metagenome; sludge
236
161
-
Ala
TGC
[ENA]
¢þ
>WENV180293881
OBIY01003394
[OBIY] beach sand metagenome; beach sand
400
475
+
Ala
TGC
[ENA]
¢þ
>WENV180309498
OBJS01002792
[OBJS] beach sand metagenome; beach sand
420
495
+
Ala
TGC
[ENA]
¢þ
>WENV180690891
OCZS010033784
[OCZS] soil metagenome; soil
1007
932
-
Ala
TGC
[ENA]
¢þ
>WENV181155227
OEID01036138
[OEID] soil metagenome; soil
126
51
-
Ala
TGC
[ENA]
¢þ
>WENV181192304
OEPS010557696
[OEPS] soil metagenome; soil
90
165
+
Ala
TGC
[ENA]
¢þ
>WENV181233615
OFET01000016
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
350110
350035
-
Ala
TGC
[ENA]
¢þ
>WENV181234511
OFEU01000237
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
51065
50990
-
Ala
TGC
[ENA]
¢þ
>WENV181308467
OFIS01027275
[OFIS] sludge metagenome; sludge
237
162
-
Ala
TGC
[ENA]
¢þ
>WENV181838138
OGVM01011843
[OGVM] freshwater metagenome; freshwater
633
558
-
Ala
TGC
[ENA]
¢þ
>WENV181843314
OGVU01008298
[OGVU] freshwater metagenome; freshwater
194
119
-
Ala
TGC
[ENA]
¢þ
>WENV181851985
OGWF01002965
[OGWF] freshwater metagenome; freshwater
1484
1409
-
Ala
TGC
[ENA]
¢þ
>WENV183678949
ORJL011942992
[ORJL] groundwater metagenome; groundwater
142
67
-
Ala
TGC
[ENA]
¢þ
>WENV183733587
PJTY01005428
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
637
712
+
Ala
TGC
[ENA]
¢þ
>WENV170012366
APMI01162179
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
214
287
+
Ala
TGC
[ENA]
¢þ
>WENV170018595
BBPD01000103
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3697
3622
-
Ala
TGC
[ENA]
¢þ
>WENV170019719
BBPE01000220
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
21732
21807
+
Ala
TGC
[ENA]
¢þ
>WENV170622391
FUWD013101341
[FUWD] metagenome; unknown
759
684
-
Ala
TGC
[ENA]
¢þ
>WENV170630615
FUWD013315758
[FUWD] metagenome; unknown
759
684
-
Ala
TGC
[ENA]
¢þ
>WENV170645682
JPYU01002623
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
80
155
+
Ala
TGC
[ENA]
¢þ
>WENV170680704
LFEF01012466
[LFEF] freshwater metagenome; waterbloom
1681
1606
-
Ala
TGC
[ENA]
¢þ
>WENV170714157
LNFM01057945
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3260
3185
-
Ala
TGC
[ENA]
¢þ
>WENV170980952
MWVT01010529
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
1153
1228
+
Ala
TGC
[ENA]
¢þ
>WENV170986250
MWVX01024316
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
263
338
+
Ala
TGC
[ENA]
¢þ
>WENV170988252
MWVX01427361
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
32
107
+
Ala
TGC
[ENA]
¢þ
>WENV170988257
MWVX01427867
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
242
167
-
Ala
TGC
[ENA]
¢þ
>WENV170988776
MWVY01004883
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
1060
1135
+
Ala
TGC
[ENA]
¢þ
>WENV170988866
MWVY01019181
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
388
313
-
Ala
TGC
[ENA]
¢þ
>WENV170992848
MWWB01108824
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
183
258
+
Ala
TGC
[ENA]
¢þ
>WENV170993585
MWWB01362169
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
195
120
-
Ala
TGC
[ENA]
¢þ
>WENV170994135
MWWD01017586
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
439
514
+
Ala
TGC
[ENA]
¢þ
>WENV170995069
MWWE01141266
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
195
120
-
Ala
TGC
[ENA]
¢þ
>WENV170995789
MWWF01060709
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
291
366
+
Ala
TGC
[ENA]
¢þ
>WENV170996277
MWWF01202133
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
52
127
+
Ala
TGC
[ENA]
¢þ
>WENV170997074
MWWG01027568
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
217
142
-
Ala
TGC
[ENA]
¢þ
>WENV170997571
MWWG01190634
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
283
208
-
Ala
TGC
[ENA]
¢þ
>WENV171003135
NNBT01001758
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
27190
27115
-
Ala
TGC
[ENA]
¢þ
>WENV171003942
NNBV01004745
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1827
1902
+
Ala
TGC
[ENA]
¢þ
>PL191001137
CP032828
Alphaproteobacteria
Sphingomonas sp. YZ-8 plasmid:unnamed1 (CP032828)
17997
17922
-
Ala
TGC
[ENA]
¡û
>C181088873
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1931076
1931001
-
Ala
TGC
-
¡û
>C181088876
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1917224
1917149
-
Ala
TGC
-
¡û
>C181088882
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1632075
1632000
-
Ala
TGC
-
¡û
>C181088924
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1923660
1923585
-
Ala
TGC
-
¡û
>C181088927
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1909808
1909733
-
Ala
TGC
-
¡û
>C181088933
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1624659
1624584
-
Ala
TGC
-
¡û
>C191015696
CP018911
Alphaproteobacteria
Glycocaulis alkaliphilus 6B-8 [CP018911]
2272968
2272893
-
Ala
TGC
-
¡û
>C191095125
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
1624127
1624202
+
Ala
TGC
-
¡û
>C191145649
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1915267
1915192
-
Ala
TGC
-
¡û
>C191145652
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1901415
1901340
-
Ala
TGC
-
¡û
>C191145658
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1616259
1616184
-
Ala
TGC
-
¡û
>C191145700
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1915267
1915192
-
Ala
TGC
-
¡û
>C191145703
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1901415
1901340
-
Ala
TGC
-
¡û
>C191145709
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1616259
1616184
-
Ala
TGC
-
¡û
>C191171224
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
1718617
1718692
+
Ala
TGC
-
¡û
>W141779101
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1921249
1921324
+
Ala
TGC
[ENA]
¡û
>W141820602
JQMZ01000001
Alphaproteobacteria
Oceanicaulis sp. HL-87 [JQMZ]
2348656
2348581
-
Ala
TGC
[ENA]
¡û
>W1910182435
BJMW01000034
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
3550
3475
-
Ala
TGC
[ENA]
¡û
>W1910182480
BJMX01000026
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
3678
3603
-
Ala
TGC
[ENA]
¡û
>C141008798
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1485110
1485185
+
Ala
TGC
[Ensembl]
¡û
>C141008804
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1769301
1769376
+
Ala
TGC
[Ensembl]
¡û
>W1910822165
MWMO01000013
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
54495
54570
+
Ala
TGC
[ENA]
¡û
>W1911139281
NOXT01000120
Alphaproteobacteria
Sandarakinorhabdus cyanobacteriorum TH057 [NOXT]
38136
38061
-
Ala
TGC
[ENA]
¡û
>W1911765789
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
1218919
1218994
+
Ala
TGC
[ENA]
¡û
>W1810109405
PHHF01000058
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
95475
95400
-
Ala
TGC
[ENA]
¡û
>SRA1003316
SRR002326.387113
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
79
154
+
Ala
TGC
[SRA]
>SRA1004282
SRR002328.245309
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
135
210
+
Ala
TGC
[SRA]
>W1810445016
PZKF01000079
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
3419
3344
-
Ala
TGC
[ENA]
¡û
>W1810463350
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2120788
2120863
+
Ala
TGC
[ENA]
¡û
>W1810463386
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
810431
810356
-
Ala
TGC
[ENA]
¡û
>C151004597
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1484197
1484272
+
Ala
TGC
[Ensembl]
¡û
>C151004600
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1498038
1498113
+
Ala
TGC
[Ensembl]
¡û
>C151004606
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1782282
1782357
+
Ala
TGC
[Ensembl]
¡û
>C11124221
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1469301
1469376
+
Ala
TGC
[Ensembl]
¡û
>C11124224
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1491048
1491123
+
Ala
TGC
[Ensembl]
¡û
>C11124230
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1778241
1778316
+
Ala
TGC
[Ensembl]
¡û
>W11151089
AEWJ01000057
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
3429
3354
-
Ala
TGC
[ENA]
¡û
>C121003144
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1500063
1500138
+
Ala
TGC
[Ensembl]
¡û
>C121003150
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1786679
1786754
+
Ala
TGC
[Ensembl]
¡û
>C121015255
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1461440
1461515
+
Ala
TGC
[Ensembl]
¡û
>C121015258
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1475380
1475455
+
Ala
TGC
[Ensembl]
¡û
>C121015264
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1737564
1737639
+
Ala
TGC
[Ensembl]
¡û
>C161070691
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3934226
3934151
-
Ala
TGC
[Ensembl]
¡û
>W1610617196
LGSZ01000097
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
2226
2301
+
Ala
TGC
[ENA]
¡û
>W1610649006
LJHQ01000066
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
2220
2295
+
Ala
TGC
[ENA]
¡û
>W1610649301
LJHX01000075
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
3555
3630
+
Ala
TGC
[ENA]
¡û
>W1610660620
LJSH01000003
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
426442
426517
+
Ala
TGC
[ENA]
¡û
>W1610731811
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
282474
282399
-
Ala
TGC
[ENA]
¡û
>W1610909957
LSFP01000022
Alphaproteobacteria
Zymomonas mobilis [LSFP]
3190
3115
-
Ala
TGC
[ENA]
¡û
>W1610912229
LSIB01000190
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
41677
41602
-
Ala
TGC
[ENA]
¡û
>W1611004962
LXQM01000003
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
68085
68010
-
Ala
TGC
[ENA]
¡û
>ENV001330
AY713454
Environmental sample from ENV division of INSDC
273
348
+
Ala
TGC
[ENA]
>W1710538950
FNUY01000004
Alphaproteobacteria
Bosea lathyri [FNUY]
529410
529335
-
Ala
TGC
[ENA]
¡û
>W1710538974
FNUY01000017
Alphaproteobacteria
Bosea lathyri [FNUY]
85160
85235
+
Ala
TGC
[ENA]
¡û
>W1710538978
FNUY01000020
Alphaproteobacteria
Bosea lathyri [FNUY]
3776
3701
-
Ala
TGC
[ENA]
¡û
>W1710538981
FNUY01000023
Alphaproteobacteria
Bosea lathyri [FNUY]
32400
32325
-
Ala
TGC
[ENA]
¡û
>W1710742810
LGSZ01000097
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
2226
2301
+
Ala
TGC
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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