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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25256 (97 seq.)
>W1710853377
LLWP01000004
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
750649
750560
-
Ser
GCT
[ENA]
¡û
>W1710870424
LMKM01000023
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
365686
365599
-
Ser
GCT
[ENA]
¡û
>W1710871259
LMLE01000003
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
17951
18040
+
Ser
GCT
[ENA]
¡û
>W1710888335
LMZQ01000041
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
25184
25097
-
Ser
GCT
[ENA]
¡û
>C171057643
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
4308459
4308546
+
Ser
GCT
-
¡û
>C171117330
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
1635270
1635357
+
Ser
GCT
-
¡û
>W131145903
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2087762
2087673
-
Ser
GCT
[ENA]
¡û
>W131234986
AULF01000002
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
52487
52398
-
Ser
GCT
[ENA]
¡û
>w027822
ABCM01000023
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
41570
41481
-
Ser
GCT
[ENA]
¡û
>W141292021
JAUG01000033
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
42506
42593
+
Ser
GCT
[ENA]
¡û
>W141350103
JCKI01000003
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
461598
461511
-
Ser
GCT
[ENA]
¡û
>WENV183726618
PJTO01000032
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
65581
65494
-
Ser
GCT
[ENA]
¢þ
>WENV183728008
PJTP01015852
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
152
241
+
Ser
GCT
[ENA]
¢þ
>WENV183728414
PJTQ01000044
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
65581
65494
-
Ser
GCT
[ENA]
¢þ
>WENV183729220
PJTQ01012257
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
437
526
+
Ser
GCT
[ENA]
¢þ
>WENV183729954
PJTR01000239
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48572
48659
+
Ser
GCT
[ENA]
¢þ
>WENV183730986
PJTS01003300
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
398
485
+
Ser
GCT
[ENA]
¢þ
>WENV183732341
PJTX01000033
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
67030
66941
-
Ser
GCT
[ENA]
¢þ
>WENV183732458
PJTX01000500
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
3400
3311
-
Ser
GCT
[ENA]
¢þ
>WENV183732589
PJTX01002910
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
88
1
-
Ser
GCT
[ENA]
¢þ
>WENV183732746
PJTX01010147
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4
91
+
Ser
GCT
[ENA]
¢þ
>WENV183732979
PJTY01000011
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
8118
8029
-
Ser
GCT
[ENA]
¢þ
>WENV183733982
PJTZ01000011
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
67030
66941
-
Ser
GCT
[ENA]
¢þ
>WENV183734133
PJTZ01000074
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
83368
83455
+
Ser
GCT
[ENA]
¢þ
>WENV183734226
PJTZ01000295
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
3400
3311
-
Ser
GCT
[ENA]
¢þ
>WENV183735273
PJUA01006941
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
720
807
+
Ser
GCT
[ENA]
¢þ
>WENV183735289
PJUA01008434
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1014
925
-
Ser
GCT
[ENA]
¢þ
>WENV183736153
PJUC01000054
[PJUC] soil metagenome; Soil enriched on filter paper
110489
110402
-
Ser
GCT
[ENA]
¢þ
>WENV183736768
PJUD01000019
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
254722
254635
-
Ser
GCT
[ENA]
¢þ
>WENV183736900
PJUD01000087
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
90541
90630
+
Ser
GCT
[ENA]
¢þ
>WENV183737358
PJUD01004673
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2779
2866
+
Ser
GCT
[ENA]
¢þ
>WENV183738671
PJUE01000083
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
44944
44855
-
Ser
GCT
[ENA]
¢þ
>WENV183738720
PJUE01000128
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
80174
80087
-
Ser
GCT
[ENA]
¢þ
>WENV183739842
PJUF01000027
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
65581
65494
-
Ser
GCT
[ENA]
¢þ
>WENV183740224
PJUF01000784
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
345
432
+
Ser
GCT
[ENA]
¢þ
>WENV183740238
PJUF01000807
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
18917
19006
+
Ser
GCT
[ENA]
¢þ
>WENV183740795
PJUF01010719
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1633
1722
+
Ser
GCT
[ENA]
¢þ
>WENV183741115
PJUF01042243
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
136
223
+
Ser
GCT
[ENA]
¢þ
>WENV183741732
PJUG01003899
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
430
343
-
Ser
GCT
[ENA]
¢þ
>WENV183742616
PJUI01000031
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
115152
115239
+
Ser
GCT
[ENA]
¢þ
>WENV170011745
APMI01087448
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
484
571
+
Ser
GCT
[ENA]
¢þ
>WENV171003117
NNBT01001472
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
61925
61836
-
Ser
GCT
[ENA]
¢þ
>C181225972
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
2962523
2962610
+
Ser
GCT
-
¡û
>C191096564
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
3367302
3367214
-
Ser
GCT
-
¡û
>C191096565
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
3366978
3366891
-
Ser
GCT
-
¡û
>W09109601
ABUJ01000014
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
14949
15038
+
Ser
GCT
[ENA]
¡û
>C191158055
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
1248427
1248340
-
Ser
GCT
-
¡û
>C191221577
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
1215355
1215268
-
Ser
GCT
-
¡û
>C191222312
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
5366667
5366756
+
Ser
GCT
-
¡û
>C191226440
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
3197755
3197842
+
Ser
GCT
-
¡û
>W09123588
ACHA01000105
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
26896
26809
-
Ser
GCT
[ENA]
¡û
>W09123610
ACHB01000025
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
14927
15014
+
Ser
GCT
[ENA]
¡û
>W141701929
JMLD01000001
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
86115
86204
+
Ser
GCT
[ENA]
¡û
>W1910377949
FUKU01000067
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
190580
190667
+
Ser
GCT
[ENA]
¡û
>W1910664186
MBTA01000010
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
20524
20612
+
Ser
GCT
[ENA]
¡û
>C09108569
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
3459208
3459119
-
Ser
GCT
[Ensembl]
¡û
>W1911136203
NOUX01000002
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
16775
16862
+
Ser
GCT
[ENA]
¡û
>W1911136279
NOUY01000031
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
12405
12316
-
Ser
GCT
[ENA]
¡û
>W1911496540
OCMT01000001
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1074511
1074598
+
Ser
GCT
[ENA]
¡û
>W1911647383
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
975842
975755
-
Ser
GCT
[ENA]
¡û
>W1810069048
PEAZ01000093
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
537
450
-
Ser
GCT
[ENA]
¡û
>W1810069070
PEBA01000013
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
13293
13380
+
Ser
GCT
[ENA]
¡û
>W1810346488
PVBQ01000008
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
213463
213552
+
Ser
GCT
[ENA]
¡û
>W1810346574
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
884071
884158
+
Ser
GCT
[ENA]
¡û
>W1810503860
QBKL01000013
Bacteroidota
Pedobacter sp. OK291 [QBKL]
852064
851977
-
Ser
GCT
[ENA]
¡û
>W1810543354
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
921937
922024
+
Ser
GCT
[ENA]
¡û
>W1810587259
QFKU01000020
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
53567
53654
+
Ser
GCT
[ENA]
¡û
>W1810597095
QGHA01000003
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
397932
397843
-
Ser
GCT
[ENA]
¡û
>W1810597096
QGHA01000003
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
397770
397682
-
Ser
GCT
[ENA]
¡û
>W1810606096
QGNY01000001
Bacteroidota
Pedobacter paludis R-8 [QGNY]
922540
922453
-
Ser
GCT
[ENA]
¡û
>W1810606144
QGNZ01000001
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
1203878
1203791
-
Ser
GCT
[ENA]
¡û
>W1810704344
QMHQ01000002
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
517959
517872
-
Ser
GCT
[ENA]
¡û
>W1810753586
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
1591014
1591101
+
Ser
GCT
[ENA]
¡û
>W1810753587
QPCG01000001
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
1591184
1591271
+
Ser
GCT
[ENA]
¡û
>W1810789225
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1475313
1475400
+
Ser
GCT
[ENA]
¡û
>W1810885608
QUNL01000016
Bacteroidota
Pedobacter sp. OV280 [QUNL]
561
474
-
Ser
GCT
[ENA]
¡û
>W1511108301
JJMU01000002
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
35220
35133
-
Ser
GCT
[ENA]
¡û
>W1511206100
JMTN01000001
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
34420
34331
-
Ser
GCT
[ENA]
¡û
>C11117937
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2588256
2588169
-
Ser
GCT
[Ensembl]
¡û
>W1511352470
JROE01000002
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
121062
121149
+
Ser
GCT
[ENA]
¡û
>W11140049
AEKX01000003
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
520262
520175
-
Ser
GCT
[ENA]
¡û
>W1511646589
LECU01000010
Bacteroidota
Pedobacter sp. BMA [LECU]
17693
17782
+
Ser
GCT
[ENA]
¡û
>C161049137
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1633707
1633794
+
Ser
GCT
[Ensembl]
¡û
>W1610716501
LLWP01000004
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
750649
750560
-
Ser
GCT
[ENA]
¡û
>W1610732770
LMKM01000023
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
365686
365599
-
Ser
GCT
[ENA]
¡û
>W1610733605
LMLE01000003
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
17951
18040
+
Ser
GCT
[ENA]
¡û
>W1610748713
LMZQ01000041
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
25184
25097
-
Ser
GCT
[ENA]
¡û
>W1610867541
LQXS01000002
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
550235
550324
+
Ser
GCT
[ENA]
¡û
>W1710516060
FNCH01000014
Bacteroidota
Pedobacter terrae [FNCH]
104665
104754
+
Ser
GCT
[ENA]
¡û
>W1710521443
FNGK01000001
Bacteroidota
Sphingobacterium mizutaii [FNGK]
1682274
1682363
+
Ser
GCT
[ENA]
¡û
>W1710522075
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
651645
651732
+
Ser
GCT
[ENA]
¡û
>W1710538706
FNUT01000010
Bacteroidota
Sphingobacterium lactis [FNUT]
19903
19814
-
Ser
GCT
[ENA]
¡û
>W1710543702
FOAF01000009
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
199148
199059
-
Ser
GCT
[ENA]
¡û
>W1710546812
FOCL01000004
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
323299
323388
+
Ser
GCT
[ENA]
¡û
>W1710546813
FOCL01000004
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
323465
323552
+
Ser
GCT
[ENA]
¡û
>W1710576355
FOZZ01000001
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
358849
358936
+
Ser
GCT
[ENA]
¡û
>W1710583236
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
1605167
1605254
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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