This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25307 (51 seq.)
>W1710785383
LJHU01000109
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
24686
24775
+
Ser
GGA
[ENA]
¡û
>W1710862013
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
59467
59556
+
Ser
GGA
[ENA]
¡û
>W1710873816
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
452709
452798
+
Ser
GGA
[ENA]
¡û
>W1710876100
LMOY01000007
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
8536
8447
-
Ser
GGA
[ENA]
¡û
>W1710877326
LMPZ01000004
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
60933
60844
-
Ser
GGA
[ENA]
¡û
>W1711407982
MGLM01000484
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
910
999
+
Ser
GGA
[ENA]
¡û
>C171094882
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
1181211
1181122
-
Ser
GGA
-
¡û
>W131052426
AMYY01000010
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
4934
4845
-
Ser
GGA
[ENA]
¡û
>WENV180015739
FSTD01000007
[FSTD] metagenome; soil
5913
5824
-
Ser
GGA
[ENA]
¢þ
>WENV180016471
FSVF01000246
[FSVF] metagenome; soil
716
627
-
Ser
GGA
[ENA]
¢þ
>WENV180020801
FTDB01002090
[FTDB] metagenome; soil
2813
2724
-
Ser
GGA
[ENA]
¢þ
>WENV180024725
FTIJ01001166
[FTIJ] metagenome; soil
2211
2300
+
Ser
GGA
[ENA]
¢þ
>WENV180027616
FTIZ01008935
[FTIZ] metagenome; soil
22415
22504
+
Ser
GGA
[ENA]
¢þ
>WENV180040727
LLBZ010009554
[LLBZ] soil metagenome; soil from tomato rhizosphere
3794
3706
-
Ser
GGA
[ENA]
¢þ
>WENV181169892
OEIV010013999
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
719
808
+
Ser
GGA
[ENA]
¢þ
>WENV181222966
OFDC01000862
[OFDC] hot springs metagenome; Water
3843
3932
+
Ser
GGA
[ENA]
¢þ
>WENV181384312
OFRI01000113
[OFRI] wastewater metagenome; Exp Tend VB 90WW
17481
17570
+
Ser
GGA
[ENA]
¢þ
>W08010846
ABRU01000050
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
189425
189339
-
Ser
GGA
[ENA]
¡û
>WENV170011806
APMI01092826
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
196
285
+
Ser
GGA
[ENA]
¢þ
>WENV170574299
FLYM01024174
[FLYM] hot springs metagenome; Sediment
314
403
+
Ser
GGA
[ENA]
¢þ
>WENV170658958
JUGB01002008
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
575
486
-
Ser
GGA
[ENA]
¢þ
>WENV170712487
LNFM01013969
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3
92
+
Ser
GGA
[ENA]
¢þ
>WENV170713607
LNFM01035668
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6983
7069
+
Ser
GGA
[ENA]
¢þ
>WENV170784286
MCHG01000437
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
10992
11081
+
Ser
GGA
[ENA]
¢þ
>WENV170832457
MDSZ01062879
[MDSZ] marine metagenome; seawater
11032
11121
+
Ser
GGA
[ENA]
¢þ
>C181056233
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2449668
2449757
+
Ser
GGA
-
¡û
>C191159624
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
2244464
2244375
-
Ser
GGA
-
¡û
>C191166116
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2709155
2709066
-
Ser
GGA
-
¡û
>W141712425
JMQR01000002
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
3064
3153
+
Ser
GGA
[ENA]
¡û
>W141731222
JNIX01000008
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
240379
240468
+
Ser
GGA
[ENA]
¡û
>W1911566762
PCPB01000019
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
38290
38379
+
Ser
GGA
[ENA]
¡û
>W1911567217
PCPK01000028
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
1937
1848
-
Ser
GGA
[ENA]
¡û
>W1911738168
QUOQ01000007
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
88371
88460
+
Ser
GGA
[ENA]
¡û
>W1810000968
BEWU01000017
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
7423
7334
-
Ser
GGA
[ENA]
¡û
>W1810693141
QLLC01000002
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
1853
1764
-
Ser
GGA
[ENA]
¡û
>W10109854
ADBM01000007
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
58879
58968
+
Ser
GGA
[ENA]
¡û
>C10102210
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2871534
2871623
+
Ser
GGA
[Ensembl]
¡û
>W11112291
ADBM01000007
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
58879
58968
+
Ser
GGA
[ENA]
¡û
>W1511489488
JWSY01000030
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
28962
29051
+
Ser
GGA
[ENA]
¡û
>W1511547904
JZRG01000043
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
7892
7803
-
Ser
GGA
[ENA]
¡û
>C161047035
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
1375723
1375812
+
Ser
GGA
[Ensembl]
¡û
>C161089088
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
334909
334998
+
Ser
GGA
[Ensembl]
¡û
>W1610074210
BCWM01000003
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
98804
98893
+
Ser
GGA
[ENA]
¡û
>W1610649189
LJHU01000109
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
24686
24775
+
Ser
GGA
[ENA]
¡û
>W1610724359
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
59467
59556
+
Ser
GGA
[ENA]
¡û
>W1610736162
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
452709
452798
+
Ser
GGA
[ENA]
¡û
>W1610738446
LMOY01000007
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
8536
8447
-
Ser
GGA
[ENA]
¡û
>W1610739672
LMPZ01000004
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
60933
60844
-
Ser
GGA
[ENA]
¡û
>W1710071328
BCWM01000003
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
98804
98893
+
Ser
GGA
[ENA]
¡û
>W1710084627
BDMM01000003
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
201690
201601
-
Ser
GGA
[ENA]
¡û
>W1710527043
FNKT01000002
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
43299
43210
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK