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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253195 (65 seq.)
>C008024
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3580981
3580906
-
Lys
TTT
[Ensembl]
¡û
>C008026
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3580780
3580705
-
Lys
TTT
[Ensembl]
¡û
>WENV180522110
OCHG01000048
[OCHG] human gut metagenome; human gut
111031
111106
+
Lys
TTT
[ENA]
¢þ
>WENV180555441
OCJO01148880
[OCJO] human gut metagenome; human gut
215
290
+
Lys
TTT
[ENA]
¢þ
>WENV180616051
OCPZ01155984
[OCPZ] human gut metagenome; human gut
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV180661273
OCVV011002007
[OCVV] gut metagenome; gut
1958
2033
+
Lys
TTT
[ENA]
¢þ
>WENV180661274
OCVV011002007
[OCVV] gut metagenome; gut
1958
2033
+
Lys
TTT
[ENA]
¢þ
>WENV180663579
OCVV011126286
[OCVV] gut metagenome; gut
2727
2652
-
Lys
TTT
[ENA]
¢þ
>WENV180663580
OCVV011126286
[OCVV] gut metagenome; gut
2727
2652
-
Lys
TTT
[ENA]
¢þ
>WENV180668203
OCVV011254845
[OCVV] gut metagenome; gut
1273
1348
+
Lys
TTT
[ENA]
¢þ
>WENV180668204
OCVV011254845
[OCVV] gut metagenome; gut
1273
1348
+
Lys
TTT
[ENA]
¢þ
>WENV180671226
OCVV011314083
[OCVV] gut metagenome; gut
100
175
+
Lys
TTT
[ENA]
¢þ
>WENV180671229
OCVV011314083
[OCVV] gut metagenome; gut
100
175
+
Lys
TTT
[ENA]
¢þ
>WENV180681849
OCVV012807099
[OCVV] gut metagenome; gut
103
178
+
Lys
TTT
[ENA]
¢þ
>WENV180681850
OCVV012807099
[OCVV] gut metagenome; gut
103
178
+
Lys
TTT
[ENA]
¢þ
>WENV180682041
OCVV012822797
[OCVV] gut metagenome; gut
450
525
+
Lys
TTT
[ENA]
¢þ
>WENV180682042
OCVV012822797
[OCVV] gut metagenome; gut
450
525
+
Lys
TTT
[ENA]
¢þ
>WENV181134250
OEGF01046171
[OEGF] human metagenome; G_DNA_Stool
600
672
+
Lys
TTT
[ENA]
¢þ
>WENV181814156
OGTF01000105
[OGTF] human gut metagenome; fecal sample 5 from infant 5
9010
9085
+
Lys
TTT
[ENA]
¢þ
>WENV181814181
OGTF01000282
[OGTF] human gut metagenome; fecal sample 5 from infant 5
1844
1769
-
Lys
TTT
[ENA]
¢þ
>WENV181827248
OGUM01001217
[OGUM] human gut metagenome; faeces
72
-1
-
Lys
TTT
[ENA]
¢þ
>WENV182029486
OHCQ01004385
[OHCQ] human gut metagenome; feces
632
557
-
Lys
TTT
[ENA]
¢þ
>W141206389
AZMC01000193
Bacillota
Negativicoccus succinicivorans DORA_17_25 [AZMC]
1740
1665
-
Lys
TTT
[ENA]
¡û
>WENV182170118
OHMV01015036
[OHMV] human gut metagenome; feces
251
326
+
Lys
TTT
[ENA]
¢þ
>WENV182176537
OHNI01007760
[OHNI] human gut metagenome; feces
1456
1381
-
Lys
TTT
[ENA]
¢þ
>WENV182186836
OHOJ01005853
[OHOJ] human gut metagenome; feces
1007
932
-
Lys
TTT
[ENA]
¢þ
>WENV182240518
OHSE01016055
[OHSE] human gut metagenome; feces
566
641
+
Lys
TTT
[ENA]
¢þ
>WENV182535855
OIXH01000021
[OIXH] human gut metagenome; faeces
164913
164988
+
Lys
TTT
[ENA]
¢þ
>WENV182539489
OIXV01006006
[OIXV] human gut metagenome; faeces
3502
3577
+
Lys
TTT
[ENA]
¢þ
>WENV182539501
OIXV01006163
[OIXV] human gut metagenome; faeces
1485
1410
-
Lys
TTT
[ENA]
¢þ
>WENV182860268
OKOR01001041
[OKOR] human gut metagenome; human gut
1569
1644
+
Lys
TTT
[ENA]
¢þ
>WENV183039660
OLGB01011546
[OLGB] human gut metagenome; faeces
379
304
-
Lys
TTT
[ENA]
¢þ
>WENV183135952
OLOE01037195
[OLOE] human gut metagenome; faeces
97
22
-
Lys
TTT
[ENA]
¢þ
>WENV183178348
OLPH01000036
[OLPH] human gut metagenome; faeces
7125
7200
+
Lys
TTT
[ENA]
¢þ
>WENV183178829
OLPH01000594
[OLPH] human gut metagenome; faeces
9566
9491
-
Lys
TTT
[ENA]
¢þ
>WENV183193948
OLPS01015491
[OLPS] human gut metagenome; faeces
532
607
+
Lys
TTT
[ENA]
¢þ
>WENV183218893
OLQJ01014307
[OLQJ] human gut metagenome; faeces
143
68
-
Lys
TTT
[ENA]
¢þ
>WENV183272634
OLRX01000076
[OLRX] human gut metagenome; faeces
15573
15648
+
Lys
TTT
[ENA]
¢þ
>WENV183706066
PDWI01003018
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
17758
17833
+
Lys
TTT
[ENA]
¢þ
>WENV183706521
PDWI01004545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
176
101
-
Lys
TTT
[ENA]
¢þ
>WENV183707167
PDWI01007151
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
13175
13100
-
Lys
TTT
[ENA]
¢þ
>WENV183707889
PDWI01011283
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2913
2838
-
Lys
TTT
[ENA]
¢þ
>WENV183709075
PDWI01023483
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
103
178
+
Lys
TTT
[ENA]
¢þ
>WENV183722268
PDWJ01115883
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
739
664
-
Lys
TTT
[ENA]
¢þ
>WENV183747042
PPCM01000123
[PPCM] marine sediment metagenome; marine sediment
16091
16166
+
Lys
TTT
[ENA]
¢þ
>WENV183747070
PPCM01000167
[PPCM] marine sediment metagenome; marine sediment
219
294
+
Lys
TTT
[ENA]
¢þ
>WENV183747349
PPCM01001059
[PPCM] marine sediment metagenome; marine sediment
4272
4197
-
Lys
TTT
[ENA]
¢þ
>WENV170031221
CDYI01046357
[CDYI] gut metagenome; human stools
17393
17468
+
Lys
TTT
[ENA]
¢þ
>WENV170033390
CDYK01024182
[CDYK] gut metagenome; human stools
231066
231141
+
Lys
TTT
[ENA]
¢þ
>WENV170645331
JMSV01000178
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV170645352
JMSV01000573
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
311
236
-
Lys
TTT
[ENA]
¢þ
>WENV170645393
JMSV01002396
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
1094
1019
-
Lys
TTT
[ENA]
¢þ
>WENV170645439
JMSV01005059
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
174
249
+
Lys
TTT
[ENA]
¢þ
>WENV170692261
LGOV01001797
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
278
353
+
Lys
TTT
[ENA]
¢þ
>W1911718397
QQWI01000010
Bacillota
Fusibacter sp. A1 [QQWI]
90214
90289
+
Lys
TTT
[ENA]
¡û
>W1911718398
QQWI01000010
Bacillota
Fusibacter sp. A1 [QQWI]
90660
90735
+
Lys
TTT
[ENA]
¡û
>W1911718408
QQWI01000012
Bacillota
Fusibacter sp. A1 [QQWI]
6962
7037
+
Lys
TTT
[ENA]
¡û
>C11106913
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
538225
538300
+
Lys
TTT
[Ensembl]
¡û
>C11106934
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
2861010
2860935
-
Lys
TTT
[Ensembl]
¡û
>C11107342
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
3943014
3942939
-
Lys
TTT
[Ensembl]
¡û
>W1710082562
BDHH01000001
Bacillota
Fusibacter sp. 3D3 [BDHH]
23281
23206
-
Lys
TTT
[ENA]
¡û
>W1710082583
BDHH01000007
Bacillota
Fusibacter sp. 3D3 [BDHH]
1653
1728
+
Lys
TTT
[ENA]
¡û
>W1710082607
BDHH01000020
Bacillota
Fusibacter sp. 3D3 [BDHH]
2447
2522
+
Lys
TTT
[ENA]
¡û
>W1710560497
FONL01000001
Bacillota
Succiniclasticum ruminis DSM 9236 [FONL]
284193
284268
+
Lys
TTT
[ENA]
¡û
>W1710590052
FRAR01000016
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
58140
58215
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK