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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253342 (32 seq.)
>W1710926362
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1361
1436
+
His
GTG
[ENA]
¡û
>C171064235
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1710575
1710650
+
His
GTG
-
¡û
>C171064256
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2591069
2591144
+
His
GTG
-
¡û
>C171064283
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2619148
2619223
+
His
GTG
-
¡û
>C171064322
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709415
709340
-
His
GTG
-
¡û
>C171109182
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
516401
516476
+
His
GTG
-
¡û
>C171109203
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396895
1396970
+
His
GTG
-
¡û
>C171109230
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424973
1425048
+
His
GTG
-
¡û
>C171109264
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4101967
4101892
-
His
GTG
-
¡û
>WENV180098090
MTBK01227307
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
764
839
+
His
GTG
[ENA]
¢þ
>WENV170674866
LCWY01012785
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
189
264
+
His
GTG
[ENA]
¢þ
>WENV170675110
LCWZ01007145
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
207
282
+
His
GTG
[ENA]
¢þ
>W141561169
JHYF01000010
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
89910
89835
-
His
GTG
[ENA]
¡û
>W1910548227
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
185970
185895
-
His
GTG
[ENA]
¡û
>W1910548248
FZOJ01000018
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
39774
39699
-
His
GTG
[ENA]
¡û
>W1910918583
NIBG01000014
Bacillota
Anaeromicrobium sediminis DY2726D [NIBG]
38992
38917
-
His
GTG
[ENA]
¡û
>C151057214
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
501954
502029
+
His
GTG
[Ensembl]
¡û
>C151057235
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1167614
1167689
+
His
GTG
[Ensembl]
¡û
>C151057250
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1179083
1179158
+
His
GTG
[Ensembl]
¡û
>W1510725312
CXYX01000009
Bacillota
Inediibacterium massiliense mt12 [CXYX]
9206
9131
-
His
GTG
[ENA]
¡û
>W1510725328
CXYX01000009
Bacillota
Inediibacterium massiliense mt12 [CXYX]
7822
7747
-
His
GTG
[ENA]
¡û
>W1510725352
CXYX01000013
Bacillota
Inediibacterium massiliense mt12 [CXYX]
678220
678295
+
His
GTG
[ENA]
¡û
>W1511527516
JYHU01000002
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
299030
298955
-
His
GTG
[ENA]
¡û
>W1511527551
JYHU01000040
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
426
351
-
His
GTG
[ENA]
¡û
>W1610783855
LOEE01000063
Bacillota
Thermotalea metallivorans [LOEE]
1361
1436
+
His
GTG
[ENA]
¡û
>W1710506664
FMUS01000003
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
454
529
+
His
GTG
[ENA]
¡û
>W1710506694
FMUS01000039
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
22868
22793
-
His
GTG
[ENA]
¡û
>W1710520407
FNFP01000001
Bacillota
Natronincola ferrireducens [FNFP]
477055
477130
+
His
GTG
[ENA]
¡û
>W1710520425
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
549318
549243
-
His
GTG
[ENA]
¡û
>W1710531823
FNPV01000002
Bacillota
Tindallia californiensis [FNPV]
387530
387455
-
His
GTG
[ENA]
¡û
>W1710553654
FOHU01000009
Bacillota
Natronincola peptidivorans [FOHU]
144799
144724
-
His
GTG
[ENA]
¡û
>W1710563846
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
201057
200982
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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