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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253547 (133 seq.)
>W1711069033
LSFG01000034
Bacillota
Tetragenococcus halophilus [LSFG]
29184
29110
-
Lys
TTT
[ENA]
¡û
>W131201149
ASVX01000004
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
238345
238271
-
Lys
TTT
[ENA]
¡û
>W131201158
ASVX01000005
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
200
274
+
Lys
TTT
[ENA]
¡û
>W131202130
ASWO01000001
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
792316
792242
-
Lys
TTT
[ENA]
¡û
>W131202161
ASWO01000004
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
87800
87726
-
Lys
TTT
[ENA]
¡û
>W131225526
AUDQ01000015
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
680
605
-
Lys
TTT
[ENA]
¡û
>W131225534
AUDQ01000026
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
825
900
+
Lys
TTT
[ENA]
¡û
>W131231678
AUIQ01000081
Bacillota
Tetragenococcus muriaticus DSM 15685 [AUIQ]
4824
4752
-
Lys
TTT
[ENA]
¡û
>W1711460451
MJEG01000003
Bacillota
Enterococcus casseliflavus [MJEG]
226272
226198
-
Lys
TTT
[ENA]
¡û
>W1712067990
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
1307028
1306954
-
Lys
TTT
[ENA]
¡û
>W1712067999
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
968651
968577
-
Lys
TTT
[ENA]
¡û
>W1712068103
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
3225
3299
+
Lys
TTT
[ENA]
¡û
>W1712068231
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1493669
1493595
-
Lys
TTT
[ENA]
¡û
>W1712068239
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1219621
1219547
-
Lys
TTT
[ENA]
¡û
>W1712069291
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
2925199
2925125
-
Lys
TTT
[ENA]
¡û
>W1712069299
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
2569656
2569582
-
Lys
TTT
[ENA]
¡û
>W1712097162
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
5133
5207
+
Lys
TTT
[ENA]
¡û
>W1712097170
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
345940
346014
+
Lys
TTT
[ENA]
¡û
>C171015367
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2354871
2354797
-
Lys
TTT
-
¡û
>C171015376
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2268237
2268163
-
Lys
TTT
-
¡û
>C171035214
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
1971022
1971097
+
Lys
TTT
-
¡û
>C171035232
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
1425126
1425051
-
Lys
TTT
-
¡û
>C171035259
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
737037
736962
-
Lys
TTT
-
¡û
>C171035470
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
2237396
2237471
+
Lys
TTT
-
¡û
>C171035500
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
882248
882173
-
Lys
TTT
-
¡û
>C171035522
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
2070596
2070671
+
Lys
TTT
-
¡û
>C171035540
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
1557664
1557589
-
Lys
TTT
-
¡û
>C171035568
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
862866
862791
-
Lys
TTT
-
¡û
>C171036831
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1994337
1994412
+
Lys
TTT
-
¡û
>C171036849
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1478618
1478543
-
Lys
TTT
-
¡û
>C171036878
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
912773
912698
-
Lys
TTT
-
¡û
>C171037683
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
2044113
2044188
+
Lys
TTT
-
¡û
>C171037701
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
1521447
1521372
-
Lys
TTT
-
¡û
>C171037729
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
827896
827821
-
Lys
TTT
-
¡û
>C171037751
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1966559
1966634
+
Lys
TTT
-
¡û
>C171037769
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1442018
1441943
-
Lys
TTT
-
¡û
>C171037796
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
807434
807359
-
Lys
TTT
-
¡û
>WENV180094421
MTBK01006095
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
779
705
-
Lys
TTT
[ENA]
¢þ
>WENV180168084
OAVP01009488
[OAVP] human gut metagenome; faeces
626
552
-
Lys
TTT
[ENA]
¢þ
>WENV180180459
OAWK01001878
[OAWK] human gut metagenome; faeces
1308
1382
+
Lys
TTT
[ENA]
¢þ
>WENV180449222
OBXF01007613
[OBXF] human gut metagenome; faeces
521
447
-
Lys
TTT
[ENA]
¢þ
>WENV180503345
OCAM01015030
[OCAM] human gut metagenome; faeces
550
476
-
Lys
TTT
[ENA]
¢þ
>WENV180504365
OCAN01001869
[OCAN] human gut metagenome; faeces
5366
5292
-
Lys
TTT
[ENA]
¢þ
>WENV182404403
OIEU01021457
[OIEU] human gut metagenome; human gut
111
37
-
Lys
TTT
[ENA]
¢þ
>WENV182539739
OIXV01014765
[OIXV] human gut metagenome; faeces
63
137
+
Lys
TTT
[ENA]
¢þ
>WENV182613489
OJKA01000741
[OJKA] metagenome; faeces
9606
9680
+
Lys
TTT
[ENA]
¢þ
>WENV183798274
PVBE010404235
[PVBE] marine metagenome; water
707
779
+
Lys
TTT
[ENA]
¢þ
>C181042720
CP020017
Bacillota
Tetragenococcus halophilus KUD23 [CP020017]
2356227
2356301
+
Lys
TTT
-
¡û
>C181042729
CP020017
Bacillota
Tetragenococcus halophilus KUD23 [CP020017]
2441529
2441603
+
Lys
TTT
-
¡û
>C181083359
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
1423712
1423638
-
Lys
TTT
-
¡û
>C181083368
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
1113892
1113818
-
Lys
TTT
-
¡û
>C181114775
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3785885
3785811
-
Lys
TTT
-
¡û
>C181114784
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3453617
3453543
-
Lys
TTT
-
¡û
>C181197191
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
2949677
2949752
+
Lys
TTT
-
¡û
>C181197208
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
2401981
2401906
-
Lys
TTT
-
¡û
>C181197235
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
1664294
1664219
-
Lys
TTT
-
¡û
>C191055627
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
300483
300409
-
Lys
TTT
-
¡û
>C191055636
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
224286
224212
-
Lys
TTT
-
¡û
>C191055696
CP027783
Bacillota
Tetragenococcus osmophilus JCM 31126 [CP027783]
969315
969387
+
Lys
TTT
-
¡û
>C191055705
CP027783
Bacillota
Tetragenococcus osmophilus JCM 31126 [CP027783]
1047070
1047142
+
Lys
TTT
-
¡û
>C191055772
CP027786
Bacillota
Tetragenococcus koreensis KCTC 3924 [CP027786]
2238825
2238899
+
Lys
TTT
-
¡û
>C191055785
CP027786
Bacillota
Tetragenococcus koreensis KCTC 3924 [CP027786]
1793433
1793359
-
Lys
TTT
-
¡û
>W09115666
ACAO01000056
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
92
166
+
Lys
TTT
[ENA]
¡û
>W141810454
JPVT01000279
Bacillota
Tetragenococcus muriaticus 3MR10-3 [JPVT]
120
192
+
Lys
TTT
[ENA]
¡û
>W141810508
JPVU01000326
Bacillota
Tetragenococcus muriaticus PMC-11-5 [JPVU]
87
159
+
Lys
TTT
[ENA]
¡û
>W1910007349
BDDY01000093
Bacillota
Tetragenococcus halophilus subsp. halophilus NRIC 0098 [BDDY]
159
233
+
Lys
TTT
[ENA]
¡û
>W1910007403
BDDZ01000163
Bacillota
Tetragenococcus halophilus subsp. halophilus 11 [BDDZ]
608
534
-
Lys
TTT
[ENA]
¡û
>W1910007452
BDEA01000082
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
147
221
+
Lys
TTT
[ENA]
¡û
>W1910007513
BDEB01000266
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
608
534
-
Lys
TTT
[ENA]
¡û
>W1910007546
BDEC01000134
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7118 [BDEC]
141
215
+
Lys
TTT
[ENA]
¡û
>W1910007616
BDED01000154
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7121 [BDED]
608
534
-
Lys
TTT
[ENA]
¡û
>W1910007669
BDEE01000199
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
147
221
+
Lys
TTT
[ENA]
¡û
>W1910007700
BDEF01000151
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
608
534
-
Lys
TTT
[ENA]
¡û
>W1910007759
BDEG01000174
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
608
534
-
Lys
TTT
[ENA]
¡û
>W1910007825
BDEH01000124
Bacillota
Tetragenococcus halophilus subsp. halophilus D10 [BDEH]
159
233
+
Lys
TTT
[ENA]
¡û
>W1910007865
BDEI01000106
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
159
233
+
Lys
TTT
[ENA]
¡û
>W1910583563
JXKI01000066
Bacillota
Enterococcus columbae DSM 7374 = ATCC 51263 [JXKI]
33
107
+
Lys
TTT
[ENA]
¡û
>W1910605489
LEOX01000036
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
2837
2911
+
Lys
TTT
[ENA]
¡û
>W1910605500
LEOX01000038
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
1217
1143
-
Lys
TTT
[ENA]
¡û
>W1911593519
PKOU01000100
Bacillota
Tetragenococcus halophilus R23 [PKOU]
608
534
-
Lys
TTT
[ENA]
¡û
>W1911640661
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
634941
635015
+
Lys
TTT
[ENA]
¡û
>W1911640670
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
714448
714522
+
Lys
TTT
[ENA]
¡û
>W1810066850
PDYK01000005
Bacillota
Sporosarcina sp. P10 [PDYK]
572
497
-
Lys
TTT
[ENA]
¡û
>W1810066880
PDYK01000040
Bacillota
Sporosarcina sp. P10 [PDYK]
641
566
-
Lys
TTT
[ENA]
¡û
>W1810066896
PDYL01000004
Bacillota
Sporosarcina sp. P12(2017) [PDYL]
570
495
-
Lys
TTT
[ENA]
¡û
>W1810066931
PDYL01000038
Bacillota
Sporosarcina sp. P12(2017) [PDYL]
1152
1077
-
Lys
TTT
[ENA]
¡û
>W1810066949
PDYM01000004
Bacillota
Sporosarcina sp. P13 [PDYM]
154314
154389
+
Lys
TTT
[ENA]
¡û
>W1810066984
PDYM01000078
Bacillota
Sporosarcina sp. P13 [PDYM]
598
673
+
Lys
TTT
[ENA]
¡û
>W1810067030
PDYN01000034
Bacillota
Sporosarcina sp. P16a [PDYN]
579
504
-
Lys
TTT
[ENA]
¡û
>W1810067035
PDYN01000042
Bacillota
Sporosarcina sp. P16a [PDYN]
1162
1087
-
Lys
TTT
[ENA]
¡û
>W1810067089
PDYO01000039
Bacillota
Sporosarcina sp. P16b [PDYO]
600
675
+
Lys
TTT
[ENA]
¡û
>W1810067121
PDYP01000022
Bacillota
Sporosarcina sp. P17b [PDYP]
34427
34502
+
Lys
TTT
[ENA]
¡û
>W1810067143
PDYP01000043
Bacillota
Sporosarcina sp. P17b [PDYP]
394
319
-
Lys
TTT
[ENA]
¡û
>W1810067198
PDYQ01000017
Bacillota
Sporosarcina sp. P18a [PDYQ]
1207
1132
-
Lys
TTT
[ENA]
¡û
>W1810067221
PDYR01000006
Bacillota
Sporosarcina sp. P19 [PDYR]
557
482
-
Lys
TTT
[ENA]
¡û
>W1810067249
PDYR01000033
Bacillota
Sporosarcina sp. P19 [PDYR]
1165
1090
-
Lys
TTT
[ENA]
¡û
>W1810067292
PDYS01000027
Bacillota
Sporosarcina sp. P1 [PDYS]
14922
14997
+
Lys
TTT
[ENA]
¡û
>W1810067298
PDYS01000046
Bacillota
Sporosarcina sp. P1 [PDYS]
592
667
+
Lys
TTT
[ENA]
¡û
>W1810067315
PDYT01000005
Bacillota
Sporosarcina sp. P20a [PDYT]
129302
129227
-
Lys
TTT
[ENA]
¡û
>W1810067341
PDYT01000007
Bacillota
Sporosarcina sp. P20a [PDYT]
104097
104172
+
Lys
TTT
[ENA]
¡û
>W1810067399
PDYU01000037
Bacillota
Sporosarcina sp. P21c [PDYU]
579
504
-
Lys
TTT
[ENA]
¡û
>W1810067407
PDYU01000049
Bacillota
Sporosarcina sp. P21c [PDYU]
594
669
+
Lys
TTT
[ENA]
¡û
>W1810067453
PDYV01000032
Bacillota
Sporosarcina sp. P25 [PDYV]
579
504
-
Lys
TTT
[ENA]
¡û
>W1810067458
PDYV01000042
Bacillota
Sporosarcina sp. P25 [PDYV]
641
566
-
Lys
TTT
[ENA]
¡û
>W1810067487
PDYW01000004
Bacillota
Sporosarcina sp. P26b [PDYW]
484
409
-
Lys
TTT
[ENA]
¡û
>W1810067513
PDYW01000066
Bacillota
Sporosarcina sp. P26b [PDYW]
767
692
-
Lys
TTT
[ENA]
¡û
>W1810067530
PDYX01000005
Bacillota
Sporosarcina sp. P29 [PDYX]
507
432
-
Lys
TTT
[ENA]
¡û
>W1810067569
PDYX01000050
Bacillota
Sporosarcina sp. P29 [PDYX]
591
666
+
Lys
TTT
[ENA]
¡û
>W1810067623
PDYY01000032
Bacillota
Sporosarcina sp. P2 [PDYY]
801
726
-
Lys
TTT
[ENA]
¡û
>W1810067640
PDYZ01000005
Bacillota
Sporosarcina sp. P30 [PDYZ]
162238
162313
+
Lys
TTT
[ENA]
¡û
>W1810067679
PDYZ01000057
Bacillota
Sporosarcina sp. P30 [PDYZ]
798
723
-
Lys
TTT
[ENA]
¡û
>W1810067698
PDZA01000005
Bacillota
Sporosarcina sp. P31 [PDZA]
162192
162267
+
Lys
TTT
[ENA]
¡û
>W1810067725
PDZA01000039
Bacillota
Sporosarcina sp. P31 [PDZA]
16118
16043
-
Lys
TTT
[ENA]
¡û
>W1810067755
PDZB01000005
Bacillota
Sporosarcina sp. P32b [PDZB]
162238
162313
+
Lys
TTT
[ENA]
¡û
>W1810067794
PDZB01000055
Bacillota
Sporosarcina sp. P32b [PDZB]
596
671
+
Lys
TTT
[ENA]
¡û
>W1810067854
PDZD01000001
Bacillota
Sporosarcina sp. P35 [PDZD]
739
664
-
Lys
TTT
[ENA]
¡û
>W1810067886
PDZD01000061
Bacillota
Sporosarcina sp. P35 [PDZD]
1022
947
-
Lys
TTT
[ENA]
¡û
>W1810067913
PDZE01000003
Bacillota
Sporosarcina sp. P3 [PDZE]
585
510
-
Lys
TTT
[ENA]
¡û
>W1810067945
PDZE01000032
Bacillota
Sporosarcina sp. P3 [PDZE]
388
463
+
Lys
TTT
[ENA]
¡û
>W1810067995
PDZF01000033
Bacillota
Sporosarcina sp. P7 [PDZF]
1159
1084
-
Lys
TTT
[ENA]
¡û
>W1810364838
PVTO01000010
Bacillota
Alkalibacterium olivapovliticus DSM 13175 [PVTO]
198
270
+
Lys
TTT
[ENA]
¡û
>W1810364842
PVTO01000024
Bacillota
Alkalibacterium olivapovliticus DSM 13175 [PVTO]
39274
39202
-
Lys
TTT
[ENA]
¡û
>W1810364870
PVTO01000052
Bacillota
Alkalibacterium olivapovliticus DSM 13175 [PVTO]
1054
1126
+
Lys
TTT
[ENA]
¡û
>C121000355
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2524599
2524525
-
Lys
TTT
[Ensembl]
¡û
>C121000364
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2441683
2441609
-
Lys
TTT
[Ensembl]
¡û
>C161023246
CP010062
Bacillota
Enterococcus cecorum CE2 [CP010062]
2434525
2434599
+
Lys
TTT
-
¡û
>C161023329
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
1394536
1394610
+
Lys
TTT
-
¡û
>W1610066768
BCPY01000088
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
601
527
-
Lys
TTT
[ENA]
¡û
>W1610909603
LSFG01000034
Bacillota
Tetragenococcus halophilus [LSFG]
29184
29110
-
Lys
TTT
[ENA]
¡û
>W1710064106
BCPY01000088
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
601
527
-
Lys
TTT
[ENA]
¡û
>W1710559402
FOMP01000006
Bacillota
Enterococcus casseliflavus [FOMP]
255989
255915
-
Lys
TTT
[ENA]
¡û
>W1710659072
JXKD01000006
Bacillota
Enterococcus aquimarinus [JXKD]
145207
145133
-
Lys
TTT
[ENA]
¡û
>W1710659888
JXLD01000027
Bacillota
Enterococcus saccharolyticus [JXLD]
14300
14226
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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