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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253634 (13 seq.)
>C171057444
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
238023
238098
+
Lys
CTT
-
¡û
>W131169182
AREO01000002
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
300725
300800
+
Lys
CTT
[ENA]
¡û
>WENV170685316
LFRM01084212
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
294
369
+
Lys
CTT
[ENA]
¢þ
>WENV170688270
LFRM01236946
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7053
7128
+
Lys
CTT
[ENA]
¢þ
>C181185408
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1442265
1442340
+
Lys
CTT
-
¡û
>C191108264
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
480612
480537
-
Lys
CTT
-
¡û
>C191122065
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
62924
62999
+
Lys
CTT
-
¡û
>C191211075
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
518730
518655
-
Lys
CTT
-
¡û
>W09128012
ACLK01000028
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
93140
93065
-
Lys
CTT
[ENA]
¡û
>C151007158
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
895685
895760
+
Lys
CTT
[Ensembl]
¡û
>C11108870
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1375779
1375854
+
Lys
CTT
[Ensembl]
¡û
>C161053137
CP013213
Bacillota
Erysipelothrix larvae LV19 [CP013213]
606399
606324
-
Lys
CTT
[Ensembl]
¡û
>C161078670
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
490475
490400
-
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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