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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253643 (11 seq.)
>W131182124
ARQC01000408
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
1187
1114
-
Arg
CCT
[ENA]
¡û
>C024104
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
1216255
1216327
+
Arg
CCT
[Ensembl]
¡û
>WENV170008923
APHM01015659
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1187
1114
-
Arg
CCT
[ENA]
¢þ
>C181192093
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1253550
1253623
+
Arg
CCT
-
¡û
>C191072357
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1212568
1212641
+
Arg
CCT
-
¡û
>C191072401
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1223363
1223436
+
Arg
CCT
-
¡û
>C191072447
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1333004
1333077
+
Arg
CCT
-
¡û
>C191072491
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1247359
1247432
+
Arg
CCT
-
¡û
>C191072536
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1290855
1290928
+
Arg
CCT
-
¡û
>W1910870046
NCQX01000029
Rhodothermota
Salinibacter ruber SP273 [NCQX]
972
1045
+
Arg
CCT
[ENA]
¡û
>C131018223
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1313293
1313366
+
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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