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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253720 (95 seq.)
>W1710987635
LPUT01000015
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1710987648
LPUT01000016
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1710987661
LPUT01000017
Bacillota
Sporosarcina sp. HYO08 [LPUT]
922
847
-
Thr
TGT
[ENA]
¡û
>W131225514
AUDQ01000009
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
142093
142017
-
Thr
TGT
[ENA]
¡û
>W1712085093
NHTN01000005
Bacillota
Indiicoccus explosivorum flavidum [NHTN]
3510
3585
+
Thr
TGT
[ENA]
¡û
>C171035213
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
1970938
1971013
+
Thr
TGT
-
¡û
>C171035258
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
737122
737047
-
Thr
TGT
-
¡û
>C171035485
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
1181757
1181681
-
Thr
TGT
-
¡û
>C171035499
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
882332
882257
-
Thr
TGT
-
¡û
>C171035521
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
2070512
2070587
+
Thr
TGT
-
¡û
>C171035553
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
1193529
1193453
-
Thr
TGT
-
¡û
>C171035567
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
862950
862875
-
Thr
TGT
-
¡û
>C171036830
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1994253
1994328
+
Thr
TGT
-
¡û
>C171036864
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1156808
1156732
-
Thr
TGT
-
¡û
>C171036877
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
912857
912782
-
Thr
TGT
-
¡û
>C171037682
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
2044029
2044104
+
Thr
TGT
-
¡û
>C171037714
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
1128604
1128528
-
Thr
TGT
-
¡û
>C171037728
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
827980
827905
-
Thr
TGT
-
¡û
>C171037750
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1966475
1966550
+
Thr
TGT
-
¡û
>C171037782
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1072099
1072023
-
Thr
TGT
-
¡û
>C171037795
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
807519
807444
-
Thr
TGT
-
¡û
>W131225533
AUDQ01000026
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
741
816
+
Thr
TGT
[ENA]
¡û
>W141215183
AZUC01000003
Bacillota
Sporosarcina sp. D27 [AZUC]
985
910
-
Thr
TGT
[ENA]
¡û
>W141215215
AZUC01000019
Bacillota
Sporosarcina sp. D27 [AZUC]
1130
1205
+
Thr
TGT
[ENA]
¡û
>W141215229
AZUC01000064
Bacillota
Sporosarcina sp. D27 [AZUC]
15964
15889
-
Thr
TGT
[ENA]
¡û
>WENV170574131
FLYM01008595
[FLYM] hot springs metagenome; Sediment
920
845
-
Thr
TGT
[ENA]
¢þ
>C181197190
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
2949593
2949668
+
Thr
TGT
-
¡û
>C181197234
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
1664378
1664303
-
Thr
TGT
-
¡û
>C191001313
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
3340139
3340064
-
Thr
TGT
-
¡û
>C191001323
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2859551
2859476
-
Thr
TGT
-
¡û
>C191001342
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
2857634
2857559
-
Thr
TGT
-
¡û
>C191001366
AP018335
Bacillota
Ureibacillus thermosphaericus A1 [AP018335]
471560
471485
-
Thr
TGT
-
¡û
>C191098730
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
2711330
2711405
+
Thr
TGT
-
¡û
>C191098751
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
3435896
3435971
+
Thr
TGT
-
¡û
>C191098801
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
1461444
1461369
-
Thr
TGT
-
¡û
>W1910230171
FOJL01000002
Bacillota
Bacillus mediterraneensis Marseille-P2366 [FOJL]
95491
95566
+
Thr
TGT
[ENA]
¡û
>W1910230201
FOJL01000007
Bacillota
Bacillus mediterraneensis Marseille-P2366 [FOJL]
44885
44810
-
Thr
TGT
[ENA]
¡û
>W1911118341
NOKQ01000134
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
81
156
+
Thr
TGT
[ENA]
¡û
>W1911118386
NOKQ01000276
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
526
601
+
Thr
TGT
[ENA]
¡û
>W1911535235
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
654628
654553
-
Thr
TGT
[ENA]
¡û
>W1911535255
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
652460
652385
-
Thr
TGT
[ENA]
¡û
>W1911535293
OLMT01000014
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
56509
56584
+
Thr
TGT
[ENA]
¡û
>W1911760526
QWVT01000032
Bacillota
Mesobacillus zeae JJ-247 [QWVT]
481
554
+
Thr
TGT
[ENA]
¡û
>W1810048901
PCGR01000013
Bacillota
Chryseomicrobium excrementi ET03 [PCGR]
448
373
-
Thr
TGT
[ENA]
¡û
>W1810066879
PDYK01000040
Bacillota
Sporosarcina sp. P10 [PDYK]
725
650
-
Thr
TGT
[ENA]
¡û
>W1810066930
PDYL01000038
Bacillota
Sporosarcina sp. P12(2017) [PDYL]
1236
1161
-
Thr
TGT
[ENA]
¡û
>W1810066969
PDYM01000039
Bacillota
Sporosarcina sp. P13 [PDYM]
30090
30014
-
Thr
TGT
[ENA]
¡û
>W1810066983
PDYM01000078
Bacillota
Sporosarcina sp. P13 [PDYM]
514
589
+
Thr
TGT
[ENA]
¡û
>W1810067034
PDYN01000042
Bacillota
Sporosarcina sp. P16a [PDYN]
1246
1171
-
Thr
TGT
[ENA]
¡û
>W1810067076
PDYO01000024
Bacillota
Sporosarcina sp. P16b [PDYO]
27390
27314
-
Thr
TGT
[ENA]
¡û
>W1810067088
PDYO01000039
Bacillota
Sporosarcina sp. P16b [PDYO]
516
591
+
Thr
TGT
[ENA]
¡û
>W1810067127
PDYP01000038
Bacillota
Sporosarcina sp. P17b [PDYP]
1124
1048
-
Thr
TGT
[ENA]
¡û
>W1810067142
PDYP01000043
Bacillota
Sporosarcina sp. P17b [PDYP]
478
403
-
Thr
TGT
[ENA]
¡û
>W1810067197
PDYQ01000017
Bacillota
Sporosarcina sp. P18a [PDYQ]
1291
1216
-
Thr
TGT
[ENA]
¡û
>W1810067248
PDYR01000033
Bacillota
Sporosarcina sp. P19 [PDYR]
1249
1174
-
Thr
TGT
[ENA]
¡û
>W1810067297
PDYS01000046
Bacillota
Sporosarcina sp. P1 [PDYS]
508
583
+
Thr
TGT
[ENA]
¡û
>W1810067314
PDYT01000005
Bacillota
Sporosarcina sp. P20a [PDYT]
129386
129311
-
Thr
TGT
[ENA]
¡û
>W1810067406
PDYU01000049
Bacillota
Sporosarcina sp. P21c [PDYU]
510
585
+
Thr
TGT
[ENA]
¡û
>W1810067457
PDYV01000042
Bacillota
Sporosarcina sp. P25 [PDYV]
725
650
-
Thr
TGT
[ENA]
¡û
>W1810067502
PDYW01000057
Bacillota
Sporosarcina sp. P26b [PDYW]
1143
1067
-
Thr
TGT
[ENA]
¡û
>W1810067512
PDYW01000066
Bacillota
Sporosarcina sp. P26b [PDYW]
851
776
-
Thr
TGT
[ENA]
¡û
>W1810067568
PDYX01000050
Bacillota
Sporosarcina sp. P29 [PDYX]
507
582
+
Thr
TGT
[ENA]
¡û
>W1810067622
PDYY01000032
Bacillota
Sporosarcina sp. P2 [PDYY]
885
810
-
Thr
TGT
[ENA]
¡û
>W1810067654
PDYZ01000028
Bacillota
Sporosarcina sp. P30 [PDYZ]
1058
1134
+
Thr
TGT
[ENA]
¡û
>W1810067678
PDYZ01000057
Bacillota
Sporosarcina sp. P30 [PDYZ]
882
807
-
Thr
TGT
[ENA]
¡û
>W1810067724
PDZA01000039
Bacillota
Sporosarcina sp. P31 [PDZA]
16202
16127
-
Thr
TGT
[ENA]
¡û
>W1810067793
PDZB01000055
Bacillota
Sporosarcina sp. P32b [PDZB]
512
587
+
Thr
TGT
[ENA]
¡û
>W1810067825
PDZC01000012
Bacillota
Sporosarcina sp. P34 [PDZC]
289
365
+
Thr
TGT
[ENA]
¡û
>W1810067839
PDZC01000023
Bacillota
Sporosarcina sp. P34 [PDZC]
959
884
-
Thr
TGT
[ENA]
¡û
>W1810067875
PDZD01000054
Bacillota
Sporosarcina sp. P35 [PDZD]
3251
3175
-
Thr
TGT
[ENA]
¡û
>W1810067885
PDZD01000061
Bacillota
Sporosarcina sp. P35 [PDZD]
1106
1031
-
Thr
TGT
[ENA]
¡û
>W1810067923
PDZE01000009
Bacillota
Sporosarcina sp. P3 [PDZE]
288
364
+
Thr
TGT
[ENA]
¡û
>W1810067944
PDZE01000032
Bacillota
Sporosarcina sp. P3 [PDZE]
304
379
+
Thr
TGT
[ENA]
¡û
>W1810067994
PDZF01000033
Bacillota
Sporosarcina sp. P7 [PDZF]
1243
1168
-
Thr
TGT
[ENA]
¡û
>W1810762643
QQAK01000013
Bacillota
Sporosarcina sp. BI001-red [QQAK]
635
710
+
Thr
TGT
[ENA]
¡û
>W1810762670
QQAK01000017
Bacillota
Sporosarcina sp. BI001-red [QQAK]
1237
1312
+
Thr
TGT
[ENA]
¡û
>W1510071748
CDGU01000005
Bacillota
Sporosarcina koreensis S-K12 [CDGU]
160701
160626
-
Thr
TGT
[ENA]
¡û
>W1510071758
CDGU01000006
Bacillota
Sporosarcina koreensis S-K12 [CDGU]
574
649
+
Thr
TGT
[ENA]
¡û
>W1510071789
CDGU01000008
Bacillota
Sporosarcina koreensis S-K12 [CDGU]
527860
527785
-
Thr
TGT
[ENA]
¡û
>W1511316119
JPVP01000016
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [JPVP]
1232
1307
+
Thr
TGT
[ENA]
¡û
>W1511479274
JWIB01000014
Bacillota
Sporosarcina sp. ZBG7A [JWIB]
72087
72012
-
Thr
TGT
[ENA]
¡û
>W11157553
AFCE01000112
Bacillota
Caldalkalibacillus thermarum TA2.A1 [AFCE]
878
803
-
Thr
TGT
[ENA]
¡û
>W11157590
AFCE01000192
Bacillota
Caldalkalibacillus thermarum TA2.A1 [AFCE]
779
854
+
Thr
TGT
[ENA]
¡û
>W11170957
AFPZ01000134
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
1128
1052
-
Thr
TGT
[ENA]
¡û
>W11170967
AFPZ01000148
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
610
685
+
Thr
TGT
[ENA]
¡û
>W11170974
AFPZ01000150
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
415
490
+
Thr
TGT
[ENA]
¡û
>W1610073499
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
249
324
+
Thr
TGT
[ENA]
¡û
>W121003635
AFEU01000001
Bacillota
Bacillus methanolicus PB1 [AFEU]
792594
792522
-
Thr
TGT
[ENA]
¡û
>W1610842579
LPUT01000015
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1610842592
LPUT01000016
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1610842605
LPUT01000017
Bacillota
Sporosarcina sp. HYO08 [LPUT]
922
847
-
Thr
TGT
[ENA]
¡û
>W1710022904
AVCX01000046
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [AVCX]
1232
1307
+
Thr
TGT
[ENA]
¡û
>W1710070617
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
249
324
+
Thr
TGT
[ENA]
¡û
>W1710602646
FUYJ01000005
Bacillota
Sporosarcina newyorkensis [FUYJ]
1343
1419
+
Thr
TGT
[ENA]
¡û
>W1710602656
FUYJ01000006
Bacillota
Sporosarcina newyorkensis [FUYJ]
215624
215549
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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