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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253726 (20 seq.)
>W1711318366
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
2731013
2731087
+
Undet
???
[ENA]
¡û
>WENV181205784
OFAP01003620
[OFAP] metagenome; hydrothermal vent
410
337
-
Lys
CTT
[ENA]
¢þ
>WENV181205878
OFAQ01003847
[OFAQ] metagenome; hydrothermal vent
410
337
-
Lys
CTT
[ENA]
¢þ
>WENV181205994
OFAR01003816
[OFAR] metagenome; hydrothermal vent
410
337
-
Lys
CTT
[ENA]
¢þ
>WENV181206418
OFAU01005465
[OFAU] metagenome; hydrothermal vent
146
219
+
Lys
CTT
[ENA]
¢þ
>WENV181206934
OFAX01003542
[OFAX] metagenome; hydrothermal vent
410
337
-
Lys
CTT
[ENA]
¢þ
>C191112450
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
3639625
3639698
+
Lys
CTT
-
¡û
>C191115391
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
2122662
2122735
+
Lys
CTT
-
¡û
>C191115508
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
2508473
2508400
-
Lys
CTT
-
¡û
>C191115619
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
532353
532280
-
Lys
CTT
-
¡û
>C191116277
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
2180530
2180603
+
Lys
CTT
-
¡û
>C191116359
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
51562
51635
+
Lys
CTT
-
¡û
>W1910184853
BJTC01000009
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
183372
183445
+
Lys
CTT
[ENA]
¡û
>W1910341211
FTPE01000018
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
595538
595465
-
Lys
CTT
[ENA]
¡û
>W1511432443
JUGN01000011
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
3637
3563
-
Lys
CTT
[ENA]
¡û
>W1511432507
JUGO01000008
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
393698
393623
-
Lys
CTT
[ENA]
¡û
>W1610436703
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
2976839
2976913
+
Undet
???
[ENA]
¡û
>W1611061709
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
2731013
2731087
+
Undet
???
[ENA]
¡û
>W1710436439
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
2976839
2976913
+
Undet
???
[ENA]
¡û
>W1710592026
FRCD01000015
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
73226
73299
+
Undet
???
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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