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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253742 (56 seq.)
>W1710854902
LLXW01000149
Gammaproteobacteria
Stenotrophomonas maltophilia [LLXW]
18087
18162
+
Met
CAT
[ENA]
¡û
>W1711517311
MLJK01000010
Gammaproteobacteria
Stenotrophomonas maltophilia [MLJK]
38560
38485
-
Met
CAT
[ENA]
¡û
>W1711613507
MOYM01000001
Gammaproteobacteria
Stenotrophomonas sp. TD3 [MOYM]
2986441
2986516
+
Met
CAT
[ENA]
¡û
>W1711959158
NBYP01000004
Gammaproteobacteria
Stenotrophomonas maltophilia [NBYP]
108449
108524
+
Met
CAT
[ENA]
¡û
>W1712106333
NIVT01000038
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVT]
22537
22612
+
Met
CAT
[ENA]
¡û
>W1712106500
NIVW01000064
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVW]
7800
7875
+
Met
CAT
[ENA]
¡û
>W1712106626
NIVY01000061
Gammaproteobacteria
Stenotrophomonas maltophilia [NIVY]
15702
15627
-
Met
CAT
[ENA]
¡û
>WENV180100198
OAOL01000116
[OAOL] sediment metagenome; sediment
18
93
+
Ile2
CAT
[ENA]
¢þ
>WENV180100293
OAOM01001252
[OAOM] sediment metagenome; sediment
983
1058
+
Ile2
CAT
[ENA]
¢þ
>WENV180310545
OBJT01003252
[OBJT] soil metagenome; soil
1484
1559
+
Ile2
CAT
[ENA]
¢þ
>WENV180354938
OBNE01036908
[OBNE] groundwater metagenome; groundwater
45711
45636
-
Ile2
CAT
[ENA]
¢þ
>WENV182798329
OJTH01000027
[OJTH] human gut metagenome; human gut
19662
19587
-
Ile2
CAT
[ENA]
¢þ
>WENV182828489
OKDH01000051
[OKDH] human gut metagenome; human gut
7671
7746
+
Ile2
CAT
[ENA]
¢þ
>WENV182842249
OKID01000024
[OKID] human gut metagenome; human gut
7688
7763
+
Ile2
CAT
[ENA]
¢þ
>C181156406
CP027562
Gammaproteobacteria
Stenotrophomonas maltophilia SJTH1 [CP027562]
4343015
4342940
-
Met
CAT
-
¡û
>C181164626
CP028358
Gammaproteobacteria
Stenotrophomonas maltophilia W18 [CP028358]
4210452
4210377
-
Met
CAT
-
¡û
>C181169371
CP028899
Gammaproteobacteria
Stenotrophomonas maltophilia AB550 [CP028899]
4288192
4288117
-
Met
CAT
-
¡û
>C181185056
CP029773
Gammaproteobacteria
Stenotrophomonas maltophilia SJTL3 [CP029773]
4272828
4272753
-
Met
CAT
-
¡û
>C191154188
CP037883
Gammaproteobacteria
Stenotrophomonas indicatrix DAIF1 [CP037883]
4083960
4083885
-
Met
CAT
-
¡û
>C191205087
LR134301
Gammaproteobacteria
Stenotrophomonas maltophilia NCTC13014 [LR134301]
4110840
4110915
+
Met
CAT
-
¡û
>W09119450
ACDV01000025
Gammaproteobacteria
Stenotrophomonas sp. SKA14 [ACDV]
127844
127919
+
Met
CAT
[ENA]
¡û
>W1910550036
FZQI01000005
Gammaproteobacteria
Stenotrophomonas sp. CC120222-04 [FZQI]
111173
111098
-
Met
CAT
[ENA]
¡û
>W1910647842
LXXE01000089
Gammaproteobacteria
Stenotrophomonas maltophilia SM-7882 [LXXE]
55485
55560
+
Met
CAT
[ENA]
¡û
>W1910648181
LXXJ01000205
Gammaproteobacteria
Stenotrophomonas maltophilia SM-100 [LXXJ]
22689
22764
+
Met
CAT
[ENA]
¡û
>W1910648195
LXXK01000017
Gammaproteobacteria
Stenotrophomonas maltophilia SM-19467 [LXXK]
5968
5893
-
Met
CAT
[ENA]
¡û
>W1910648416
LXXN01000072
Gammaproteobacteria
Stenotrophomonas maltophilia SM-17711 [LXXN]
25338
25263
-
Met
CAT
[ENA]
¡û
>W1910648507
LXXO01000093
Gammaproteobacteria
Stenotrophomonas maltophilia SM-24179 [LXXO]
25231
25156
-
Met
CAT
[ENA]
¡û
>W1910648702
LXXS01000001
Gammaproteobacteria
Stenotrophomonas maltophilia SM-1006 [LXXS]
48882
48957
+
Met
CAT
[ENA]
¡û
>W1910648952
LXXW01000002
Gammaproteobacteria
Stenotrophomonas maltophilia SM-1389 [LXXW]
17862
17937
+
Met
CAT
[ENA]
¡û
>W1910649048
LXXX01000078
Gammaproteobacteria
Stenotrophomonas maltophilia SM-38795 [LXXX]
37515
37440
-
Met
CAT
[ENA]
¡û
>W1910649206
LXXZ01000100
Gammaproteobacteria
Stenotrophomonas sepilia SM-16975 [LXXZ]
47871
47946
+
Met
CAT
[ENA]
¡û
>W1910786045
MQWK01000044
Gammaproteobacteria
Stenotrophomonas maltophilia ZC_2004 [MQWK]
101587
101662
+
Met
CAT
[ENA]
¡û
>W1910786943
MQWX01000087
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2003_STM1 [MQWX]
18383
18458
+
Met
CAT
[ENA]
¡û
>W1910787506
MQXF01000098
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2013 [MQXF]
30354
30429
+
Met
CAT
[ENA]
¡û
>W1910787741
MQXJ01000030
Gammaproteobacteria
Stenotrophomonas maltophilia MS_2008 [MQXJ]
462581
462656
+
Met
CAT
[ENA]
¡û
>W1910887017
NEQQ01000006
Gammaproteobacteria
Stenotrophomonas maltophilia EA21 [NEQQ]
1222071
1221996
-
Met
CAT
[ENA]
¡û
>W1910887861
NERD01000002
Gammaproteobacteria
Stenotrophomonas maltophilia E301 [NERD]
3402215
3402140
-
Met
CAT
[ENA]
¡û
>W1910888027
NERG01000001
Gammaproteobacteria
Stenotrophomonas maltophilia E759 [NERG]
1984442
1984367
-
Met
CAT
[ENA]
¡û
>W1810118688
PHQX01000001
Gammaproteobacteria
Stenotrophomonas lactitubi M15 [PHQX]
3673709
3673634
-
Met
CAT
[ENA]
¡û
>W1810377205
PXIJ01000250
Gammaproteobacteria
Stenotrophomonas maltophilia SP4330 [PXIJ]
284
209
-
Met
CAT
[ENA]
¡û
>W1810377293
PXIL01000029
Gammaproteobacteria
Stenotrophomonas maltophilia BA27164 [PXIL]
4332
4407
+
Met
CAT
[ENA]
¡û
>W1810591451
QFTK01000003
Gammaproteobacteria
Stenotrophomonas maltophilia D5_25A [QFTK]
32977
33052
+
Met
CAT
[ENA]
¡û
>C151079446
CP011305
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS2 [CP011305]
3942174
3942099
-
Met
CAT
-
¡û
>C151079518
CP011306
Gammaproteobacteria
Stenotrophomonas maltophilia ISMMS2R [CP011306]
3942174
3942099
-
Met
CAT
-
¡û
>W1511390091
JSXG01000016
Gammaproteobacteria
Stenotrophomonas maltophilia B418 [JSXG]
114610
114685
+
Met
CAT
[ENA]
¡û
>W1511447861
JUZC01000028
Gammaproteobacteria
Stenotrophomonas maltophilia 638_SMAL [JUZC]
39160
39235
+
Met
CAT
[ENA]
¡û
>W1511453142
JVEW01000720
Gammaproteobacteria
Stenotrophomonas maltophilia 495_SMAL [JVEW]
558
483
-
Met
CAT
[ENA]
¡û
>W1511453531
JVFG01000216
Gammaproteobacteria
Stenotrophomonas maltophilia 485_SMAL [JVFG]
49961
50036
+
Met
CAT
[ENA]
¡û
>W1511459087
JVKB01000016
Gammaproteobacteria
Stenotrophomonas maltophilia 363_SMAL [JVKB]
55599
55674
+
Met
CAT
[ENA]
¡û
>W1511461150
JVMF01000019
Gammaproteobacteria
Stenotrophomonas maltophilia 305_SMAL [JVMF]
288134
288209
+
Met
CAT
[ENA]
¡û
>W1511464056
JVPM01000004
Gammaproteobacteria
Stenotrophomonas maltophilia 22_SMAL [JVPM]
40503
40428
-
Met
CAT
[ENA]
¡û
>W1511465639
JVRD01000014
Gammaproteobacteria
Stenotrophomonas maltophilia 179_SMAL [JVRD]
223816
223741
-
Met
CAT
[ENA]
¡û
>W1511469179
JVUZ01000219
Gammaproteobacteria
Stenotrophomonas maltophilia 1297_SMAL [JVUZ]
37352
37277
-
Met
CAT
[ENA]
¡û
>W121016590
AGRB01000150
Gammaproteobacteria
Stenotrophomonas maltophilia RR-10 [AGRB]
50370
50295
-
Met
CAT
[ENA]
¡û
>W1610717043
LLXT01000102
Gammaproteobacteria
Stenotrophomonas geniculata ATCC 19374 = JCM 13324 [LLXT]
16045
16120
+
Met
CAT
[ENA]
¡û
>W1610717243
LLXW01000149
Gammaproteobacteria
Stenotrophomonas maltophilia [LLXW]
18087
18162
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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