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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25413 (9 seq.)
>W131230192
AUHK01000003
Bacillota
Helcococcus sueciensis DSM 17243 [AUHK]
42644
42554
-
Ser
GCT
[ENA]
¡û
>WENV183708090
PDWI01012862
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
90
180
+
Ser
GCT
[ENA]
¡û
>W141619961
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
108676
108586
-
Ser
GCT
[ENA]
¡û
>W141619976
JJMM01000024
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
148
58
-
Ser
GCT
[ENA]
¡û
>W2011534325
SCFP01000037
Bacillota
Helcococcus ovis KG-40 [SCFP]
2808
2898
+
Ser
GCT
[ENA]
¡û
>W2011534346
SCFQ01000006
Bacillota
Helcococcus ovis KG-39 [SCFQ]
59481
59391
-
Ser
GCT
[ENA]
¡û
>W2011534375
SCFR01000002
Bacillota
Helcococcus ovis KG-37 [SCFR]
114554
114464
-
Ser
GCT
[ENA]
¡û
>W2011534408
SCFS01000001
Bacillota
Helcococcus ovis KG-36 [SCFS]
198216
198306
+
Ser
GCT
[ENA]
¡û
>W1710594554
FSRH01000033
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
1052
962
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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