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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25413 (41 seq.)
>W1710991596
LPXV01000004
Bacillota
Levilactobacillus brevis [LPXV]
9003
8914
-
Ser
GCT
[ENA]
¡û
>W1711373151
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
1975187
1975276
+
Ser
GCT
[ENA]
¡û
>W1711748603
MULL01000001
Bacillota
Levilactobacillus brevis [MULL]
925362
925451
+
Ser
GCT
[ENA]
¡û
>W1712056409
NFZZ01000013
Bacillota
Levilactobacillus brevis [NFZZ]
1514
1603
+
Ser
GCT
[ENA]
¡û
>C171037646
CP015338
Bacillota
Levilactobacillus brevis 100D8 [CP015338]
1766559
1766648
+
Ser
GCT
-
¡û
>C171099146
CP019734
Bacillota
Levilactobacillus brevis TMW 1.2108 [CP019734]
1064862
1064951
+
Ser
GCT
-
¡û
>C171099209
CP019743
Bacillota
Levilactobacillus brevis TMW 1.2111 [CP019743]
1069014
1069103
+
Ser
GCT
-
¡û
>C171099301
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
1589131
1589042
-
Ser
GCT
-
¡û
>C171119525
CP021479
Bacillota
Levilactobacillus brevis SRCM101174 [CP021479]
948251
948340
+
Ser
GCT
-
¡û
>C171121206
CP021674
Bacillota
Levilactobacillus brevis SRCM101106 [CP021674]
897521
897610
+
Ser
GCT
-
¡û
>C011337
CP000416
Bacillota
Levilactobacillus brevis ATCC 367 [CP000416]
1142170
1142083
-
Ser
GCT
[Ensembl]
¡û
>W141086212
AUTD01000004
Bacillota
Levilactobacillus brevis EW [AUTD]
9003
8914
-
Ser
GCT
[ENA]
¡û
>W141279971
JAGR01000001
Bacillota
Levilactobacillus brevis AG48 [JAGR]
357498
357409
-
Ser
GCT
[ENA]
¡û
>WENV183705423
PDWI01001534
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
36047
35957
-
Ser
GCT
[ENA]
¢þ
>WENV183722273
PDWJ01115883
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
311
221
-
Ser
GCT
[ENA]
¢þ
>WENV170659417
JXWR01005375
[JXWR] soil metagenome; rice field; ambient CO2
315
404
+
Ser
GCT
[ENA]
¢þ
>C181052536
CP021456
Bacillota
Levilactobacillus brevis ZLB004 [CP021456]
1033116
1033205
+
Ser
GCT
-
¡û
>C181103404
CP024635
Bacillota
Levilactobacillus brevis BDGP6 [CP024635]
737209
737120
-
Ser
GCT
-
¡û
>C181211316
LS483405
Bacillota
Levilactobacillus brevis NCTC13768 [LS483405]
970660
970749
+
Ser
GCT
-
¡û
>C191074041
CP031174
Bacillota
Levilactobacillus brevis UCCLB556 [CP031174]
924454
924543
+
Ser
GCT
-
¡û
>C191074163
CP031185
Bacillota
Levilactobacillus brevis SA-C12 [CP031185]
986473
986562
+
Ser
GCT
-
¡û
>C191074284
CP031208
Bacillota
Levilactobacillus brevis UCCLB521 [CP031208]
909130
909219
+
Ser
GCT
-
¡û
>W1910231002
FPCM01000112
Bacillota
Levilactobacillus brevis [FPCM]
1437
1526
+
Ser
GCT
[ENA]
¡û
>W1910231081
FPCN01000106
Bacillota
Levilactobacillus brevis [FPCN]
8583
8494
-
Ser
GCT
[ENA]
¡û
>W1910922781
NIGI01000073
Bacillota
Levilactobacillus brevis SF15B [NIGI]
21372
21283
-
Ser
GCT
[ENA]
¡û
>W1910922805
NIGJ01000004
Bacillota
Levilactobacillus brevis SF9B [NIGJ]
148387
148298
-
Ser
GCT
[ENA]
¡û
>W1910922873
NIGK01000004
Bacillota
Levilactobacillus brevis ZG1 [NIGK]
174414
174325
-
Ser
GCT
[ENA]
¡û
>W1911386143
NVYO01000001
Bacillota
Levilactobacillus brevis D7 [NVYO]
1016386
1016475
+
Ser
GCT
[ENA]
¡û
>W1810476138
QAJZ01000045
Bacillota
Levilactobacillus brevis DM9218 [QAJZ]
443
354
-
Ser
GCT
[ENA]
¡û
>W1810489229
QAZW01000030
Bacillota
Levilactobacillus brevis DS1_5 [QAZW]
1437
1526
+
Ser
GCT
[ENA]
¡û
>W1810699064
QMCB01000005
Bacillota
Levilactobacillus brevis TUCO-5E [QMCB]
1608
1697
+
Ser
GCT
[ENA]
¡û
>W1810780413
QQPA01000069
Bacillota
Levilactobacillus brevis WIKIM12 [QQPA]
78904
78815
-
Ser
GCT
[ENA]
¡û
>W1510013570
BBOW01000069
Bacillota
Levilactobacillus brevis WK12 [BBOW]
78904
78815
-
Ser
GCT
[ENA]
¡û
>W1511270493
JOKA01000094
Bacillota
Levilactobacillus brevis DmCS_003 [JOKA]
263
174
-
Ser
GCT
[ENA]
¡û
>W1511512343
JXUF01000002
Bacillota
Levilactobacillus brevis TMW 1.313 [JXUF]
1916556
1916645
+
Ser
GCT
[ENA]
¡û
>W1511512404
JXUG01000003
Bacillota
Levilactobacillus brevis TMW 1.465 [JXUG]
976030
976119
+
Ser
GCT
[ENA]
¡û
>C161003670
CP005977
Bacillota
Levilactobacillus brevis BSO 464 [CP005977]
449496
449585
+
Ser
GCT
-
¡û
>C161086927
CP015398
Bacillota
Levilactobacillus brevis NPS-QW-145 [CP015398]
1261727
1261816
+
Ser
GCT
-
¡û
>W1610033013
AZCP01000008
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AZCP]
1434
1523
+
Ser
GCT
[ENA]
¡û
>W1610585934
LDEI01000013
Bacillota
Levilactobacillus brevis [LDEI]
76029
75940
-
Ser
GCT
[ENA]
¡û
>W1710705214
LDEI01000013
Bacillota
Levilactobacillus brevis [LDEI]
76029
75940
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK