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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254278 (37 seq.)
>W131036505
ALVS01000078
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
108143
108217
+
Arg
TCT
[ENA]
¡û
>W131036556
ALVW01000016
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
254763
254837
+
Arg
TCT
[ENA]
¡û
>W131065846
ANNX01000100
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
72829
72755
-
Arg
TCT
[ENA]
¡û
>W1711577086
MNPM01000013
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
53467
53393
-
Arg
TCT
[ENA]
¡û
>W1711666488
MRCA01000001
Cyanobacteriota
Fischerella major NIES-592 [MRCA]
142691
142765
+
Arg
TCT
[ENA]
¡û
>W1711711295
MTAV01000004
Cyanobacteriota
Nostoc sp. T09 [MTAV]
45181
45107
-
Arg
TCT
[ENA]
¡û
>W1711711370
MTAW01000117
Cyanobacteriota
Nostoc sp. 106C [MTAW]
28686
28760
+
Arg
TCT
[ENA]
¡û
>C015271
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
1592150
1592222
+
Arg
TCT
[Ensembl]
¡û
>WENV180015241
FQKF010449931
[FQKF] soil metagenome; Soil
37
111
+
Arg
TCT
[ENA]
¢þ
>W141021248
AJLJ01000067
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
59571
59645
+
Arg
TCT
[ENA]
¡û
>w002288
AAAY02000051
Cyanobacteriota
Nostoc punctiforme [AAAY]
54520
54597
+
Arg
TCT
[ENA]
¡û
>W141038516
ALVX01000023
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
312192
312266
+
Arg
TCT
[ENA]
¡û
>C08006955
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
955316
955242
-
Arg
TCT
[Ensembl]
¡û
>WENV171003480
NNBU01000088
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
306
380
+
Arg
TCT
[ENA]
¢þ
>WENV171003679
NNBV01000080
[NNBV] plant metagenome; symbiotic tissue sample KVS11
15627
15701
+
Arg
TCT
[ENA]
¢þ
>C181004758
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5200428
5200502
+
Arg
TCT
-
¡û
>C181137744
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
7581588
7581514
-
Arg
TCT
-
¡û
>C191083022
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3307198
3307272
+
Arg
TCT
-
¡û
>W1910842093
NAPS01000002
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
2370424
2370350
-
Arg
TCT
[ENA]
¡û
>W1911070657
NMQA01000079
Cyanobacteriota
Fischerella thermalis CCMEE 5268 [NMQA]
3349
3275
-
Arg
TCT
[ENA]
¡û
>W1911070819
NMQD01001741
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
2394
2320
-
Arg
TCT
[ENA]
¡û
>W1911070872
NMQF01000029
Cyanobacteriota
Fischerella thermalis CCMEE 5198 [NMQF]
14867
14793
-
Arg
TCT
[ENA]
¡û
>W1911071010
NMQI01000252
Cyanobacteriota
Fischerella thermalis CCMEE 5330 [NMQI]
1158
1232
+
Arg
TCT
[ENA]
¡û
>W1911071033
NMQJ01000096
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
10222
10296
+
Arg
TCT
[ENA]
¡û
>W1911071075
NMQK01000177
Cyanobacteriota
Fischerella thermalis CCMEE 5201 [NMQK]
13448
13374
-
Arg
TCT
[ENA]
¡û
>W1911118652
NOLI01000028
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
49201
49275
+
Arg
TCT
[ENA]
¡û
>W1911118817
NOLK01000060
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
16803
16729
-
Arg
TCT
[ENA]
¡û
>W1911178244
NQMD01001635
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
1039
1113
+
Arg
TCT
[ENA]
¡û
>W1911178270
NQME01000362
Cyanobacteriota
Fischerella thermalis CCMEE 5194 [NQME]
1277
1203
-
Arg
TCT
[ENA]
¡û
>W1911178317
NQMF01001155
Cyanobacteriota
Fischerella thermalis CCMEE 5328 [NQMF]
589
663
+
Arg
TCT
[ENA]
¡û
>W1511501681
JXCA01000014
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
167365
167291
-
Arg
TCT
[ENA]
¡û
>W1511504568
JXIJ01000070
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
53467
53393
-
Arg
TCT
[ENA]
¡û
>C161002628
AP017305
Cyanobacteriota
Fischerella sp. NIES-3754 [AP017305]
5092875
5092801
-
Arg
TCT
[Ensembl]
¡û
>W1610003553
AGCR01000061
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
10861
10935
+
Arg
TCT
[ENA]
¡û
>W1610084883
CDHJ01000290
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
13357
13282
-
Arg
TCT
[ENA]
¡û
>W1710004173
AGCR01000061
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
10861
10935
+
Arg
TCT
[ENA]
¡û
>W1710089745
CDHJ01000290
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
13357
13282
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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