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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254286 (63 seq.)
>W1710882874
LMVE01000006
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
7676
7603
-
Arg
CCG
[ENA]
¡û
>W131065834
ANNX01000054
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
7839
7765
-
Arg
CCG
[ENA]
¡û
>W1711081235
LSSA01000149
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
3443
3515
+
Arg
CCG
[ENA]
¡û
>W1711116517
LUBZ01000003
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
32259
32187
-
Arg
CCG
[ENA]
¡û
>W1711120923
LUHJ01000033
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
76325
76253
-
Arg
CCG
[ENA]
¡û
>W1711335595
MBQX01000083
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
32850
32923
+
Arg
CCG
[ENA]
¡û
>W1711335627
MBQY01000048
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
182096
182024
-
Arg
CCG
[ENA]
¡û
>W131036551
ALVW01000015
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
22663
22735
+
Arg
CCG
[ENA]
¡û
>W131089995
AOFE01000068
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
27033
27105
+
Arg
CCG
[ENA]
¡û
>W1711666740
MRCF01000108
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
13045
12973
-
Arg
CCG
[ENA]
¡û
>W1711711350
MTAV01000248
Cyanobacteriota
Nostoc sp. T09 [MTAV]
24075
24147
+
Arg
CCG
[ENA]
¡û
>W1711711434
MTAX01000070
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
8163
8091
-
Arg
CCG
[ENA]
¡û
>C171097558
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
3980425
3980353
-
Arg
CCG
-
¡û
>W131058309
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
2788548
2788620
+
Arg
CCG
[ENA]
¡û
>C001243
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
238386
238314
-
Arg
CCG
[Ensembl]
¡û
>C015303
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
2845593
2845521
-
Arg
CCG
[Ensembl]
¡û
>w021697
AAVW01000039
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
23788
23863
+
Arg
CCG
[ENA]
¡û
>C08006904
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5757868
5757940
+
Arg
CCG
[Ensembl]
¡û
>WENV171003098
NNBT01000873
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
170
242
+
Arg
CCG
[ENA]
¢þ
>WENV171003391
NNBT01009005
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
153
81
-
Arg
CCG
[ENA]
¢þ
>WENV171003434
NNBU01000020
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
35066
34992
-
Arg
CCG
[ENA]
¢þ
>WENV171003471
NNBU01000067
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
15651
15723
+
Arg
CCG
[ENA]
¢þ
>WENV171003680
NNBV01000091
[NNBV] plant metagenome; symbiotic tissue sample KVS11
9637
9709
+
Arg
CCG
[ENA]
¢þ
>C181004743
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
751162
751234
+
Arg
CCG
-
¡û
>C181043631
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
4475323
4475251
-
Arg
CCG
-
¡û
>C181078448
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
982992
982920
-
Arg
CCG
-
¡û
>C181137712
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
3025273
3025345
+
Arg
CCG
-
¡û
>C181137806
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
4314303
4314375
+
Arg
CCG
-
¡û
>C191001291
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
1848883
1848811
-
Arg
CCG
-
¡û
>C191083012
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
138668
138740
+
Arg
CCG
-
¡û
>W09101150
AAEA01000004
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
6444
6372
-
Arg
CCG
[ENA]
¡û
>W09125764
ACIR01000110
Cyanobacteriota
Trichormus azollae 708 [ACIR]
584
658
+
Arg
CCG
[ENA]
¡û
>W1910008398
BDGE01000029
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
104351
104423
+
Arg
CCG
[ENA]
¡û
>W1910020542
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
805725
805653
-
Arg
CCG
[ENA]
¡û
>W1910596260
LAGY01000012
Cyanobacteriota
Nostoc linckia z2 [LAGY]
119815
119887
+
Arg
CCG
[ENA]
¡û
>W1910597155
LAHI01000098
Cyanobacteriota
Nostoc linckia z16 [LAHI]
4192
4264
+
Arg
CCG
[ENA]
¡û
>W1910646649
LWSY01000078
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
19880
19808
-
Arg
CCG
[ENA]
¡û
>W1910792696
MRBZ01000189
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
5809
5737
-
Arg
CCG
[ENA]
¡û
>W1910805260
MTPU01000017
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
145019
145091
+
Arg
CCG
[ENA]
¡û
>W1910943182
NJHS01000039
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
8026
7953
-
Arg
CCG
[ENA]
¡û
>W1910943370
NJHX01000032
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
17760
17833
+
Arg
CCG
[ENA]
¡û
>W1911118657
NOLI01000041
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
15301
15373
+
Arg
CCG
[ENA]
¡û
>W1911118763
NOLJ01000012
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
94180
94252
+
Arg
CCG
[ENA]
¡û
>W1911118773
NOLK01000004
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
100838
100766
-
Arg
CCG
[ENA]
¡û
>W1911153667
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1267296
1267224
-
Arg
CCG
[ENA]
¡û
>W1911153705
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1439530
1439458
-
Arg
CCG
[ENA]
¡û
>W1810355681
PVMC01000083
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
58230
58303
+
Arg
CCG
[ENA]
¡û
>W1511013884
JHEG02000059
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
1383526
1383452
-
Arg
CCG
[ENA]
¡û
>W1511501705
JXCB01000002
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
187060
187132
+
Arg
CCG
[ENA]
¡û
>C161002525
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
4801533
4801461
-
Arg
CCG
[Ensembl]
¡û
>C161005337
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
3974019
3974091
+
Arg
CCG
[Ensembl]
¡û
>W1610084868
CDHJ01000128
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
26138
26066
-
Arg
CCG
[ENA]
¡û
>C131004260
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
1999994
2000066
+
Arg
CCG
[Ensembl]
¡û
>C131004144
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3217084
3217156
+
Arg
CCG
[Ensembl]
¡û
>C131010315
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6154045
6153973
-
Arg
CCG
[Ensembl]
¡û
>W1610656796
LJOR01000037
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
57772
57844
+
Arg
CCG
[ENA]
¡û
>W1610744800
LMVE01000006
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
7676
7603
-
Arg
CCG
[ENA]
¡û
>W1610927759
LUBZ01000003
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
32259
32187
-
Arg
CCG
[ENA]
¡û
>W1610932112
LUHI01000017
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
76331
76259
-
Arg
CCG
[ENA]
¡û
>W1610932160
LUHJ01000033
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
76325
76253
-
Arg
CCG
[ENA]
¡û
>W1610979406
LWAJ01000232
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
8523
8451
-
Arg
CCG
[ENA]
¡û
>W1710087987
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
3577263
3577191
-
Arg
CCG
[ENA]
¡û
>W1710089730
CDHJ01000128
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
26138
26066
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK