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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254427 (45 seq.)
>W1711259321
LYVF01000047
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
111135
111210
+
Glu
TTC
[ENA]
¡û
>W1711259345
LYVF01000171
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
30614
30539
-
Glu
TTC
[ENA]
¡û
>W131219071
ATYG01000002
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
21386
21311
-
Glu
TTC
[ENA]
¡û
>W131237137
AUMW01000010
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
142522
142597
+
Glu
TTC
[ENA]
¡û
>W131237154
AUMW01000016
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
33302
33377
+
Glu
TTC
[ENA]
¡û
>W131237160
AUMW01000027
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
51725
51800
+
Glu
TTC
[ENA]
¡û
>C005880
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
400587
400662
+
Glu
TTC
[Ensembl]
¡û
>WENV170004029
AGTN01541211
[AGTN] bioreactor metagenome; poplar biomass
393
318
-
Glu
TTC
[ENA]
¢þ
>WENV170563995
CZCB01040885
[CZCB] anaerobic digester metagenome; anaerobic digester
2054
1979
-
Glu
TTC
[ENA]
¢þ
>WENV170677417
LDZT01005353
[LDZT] terrestrial metagenome; oil reservoir sample SB1
6696
6621
-
Glu
TTC
[ENA]
¢þ
>WENV170684573
LFRM01047119
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8053
7978
-
Glu
TTC
[ENA]
¢þ
>WENV170686132
LFRM01128032
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
7201
7126
-
Glu
TTC
[ENA]
¢þ
>WENV170722139
LSQX01217345
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
168
93
-
Glu
TTC
[ENA]
¢þ
>W09108838
ABTQ01000012
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
28471
28546
+
Glu
TTC
[ENA]
¡û
>W09108858
ABTQ01000046
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
26949
27024
+
Glu
TTC
[ENA]
¡û
>W09108876
ABTQ01000089
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
5470
5545
+
Glu
TTC
[ENA]
¡û
>W09135929
BAAC01000192
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
7465
7390
-
Glu
TTC
[ENA]
¡û
>W141801450
JPED01000008
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JPED]
939
1014
+
Glu
TTC
[ENA]
¡û
>W1911661973
QFFZ01000036
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
8455
8380
-
Glu
TTC
[ENA]
¡û
>C10104786
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
12851
12926
+
Glu
TTC
[Ensembl]
¡û
>C10104802
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1282579
1282654
+
Glu
TTC
[Ensembl]
¡û
>C10104843
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
3231300
3231225
-
Glu
TTC
[Ensembl]
¡û
>W121010865
AGJQ01000005
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
34073
33998
-
Glu
TTC
[ENA]
¡û
>W121010871
AGJQ01000006
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
33971
34046
+
Glu
TTC
[ENA]
¡û
>W121010875
AGJQ01000008
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
66313
66388
+
Glu
TTC
[ENA]
¡û
>W1610073883
BCWE01000008
Bacillota
Desulfolucanica intricata intricatum [BCWE]
77888
77963
+
Glu
TTC
[ENA]
¡û
>C131002643
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
1402752
1402827
+
Glu
TTC
[Ensembl]
¡û
>C131002656
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
4832178
4832103
-
Glu
TTC
[Ensembl]
¡û
>C131002672
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
2109153
2109078
-
Glu
TTC
[Ensembl]
¡û
>W1610605493
LFSA01000015
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
8053
7978
-
Glu
TTC
[ENA]
¡û
>W1610605502
LFSA01000037
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
7201
7126
-
Glu
TTC
[ENA]
¡û
>W1610613575
LGFZ01000108
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
6696
6621
-
Glu
TTC
[ENA]
¡û
>W1611021410
LYVF01000047
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
111135
111210
+
Glu
TTC
[ENA]
¡û
>W1611021434
LYVF01000171
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
30614
30539
-
Glu
TTC
[ENA]
¡û
>W1710071001
BCWE01000008
Bacillota
Desulfolucanica intricata intricatum [BCWE]
77888
77963
+
Glu
TTC
[ENA]
¡û
>W1710083566
BDJK01000043
Bacillota
Carboxydothermus pertinax [BDJK]
6254
6329
+
Glu
TTC
[ENA]
¡û
>W1710083605
BDJL01000041
Bacillota
Carboxydothermus islandicus [BDJL]
60922
60997
+
Glu
TTC
[ENA]
¡û
>W1710562349
FOOX01000001
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
500825
500900
+
Glu
TTC
[ENA]
¡û
>W1710562368
FOOX01000011
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
148212
148137
-
Glu
TTC
[ENA]
¡û
>W1710562386
FOOX01000017
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
68748
68673
-
Glu
TTC
[ENA]
¡û
>W1710574786
FOYM01000005
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
29040
29115
+
Glu
TTC
[ENA]
¡û
>W1710574811
FOYM01000024
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
33653
33728
+
Glu
TTC
[ENA]
¡û
>W1710726780
LFSA01000015
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
8053
7978
-
Glu
TTC
[ENA]
¡û
>W1710726789
LFSA01000037
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
7201
7126
-
Glu
TTC
[ENA]
¡û
>W1710734747
LGFZ01000108
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
6696
6621
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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