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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254429 (32 seq.)
>W131237177
AUMW01000035
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
1676
1601
-
Thr
GGT
[ENA]
¡û
>W131160401
AQWN01000015
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
23049
23124
+
Thr
GGT
[ENA]
¡û
>C018170
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
307729
307804
+
Thr
GGT
[Ensembl]
¡û
>WENV170563774
CZCB01028926
[CZCB] anaerobic digester metagenome; anaerobic digester
290
215
-
Thr
GGT
[ENA]
¢þ
>WENV170677643
LDZT01007609
[LDZT] terrestrial metagenome; oil reservoir sample SB1
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV170687846
LFRM01213722
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
778
703
-
Thr
GGT
[ENA]
¢þ
>C181166313
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
1473029
1473104
+
Thr
GGT
-
¡û
>C181166338
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2175681
2175756
+
Thr
GGT
-
¡û
>C181166387
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1495921
1495996
+
Thr
GGT
-
¡û
>C181166412
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2218329
2218404
+
Thr
GGT
-
¡û
>W09135920
BAAC01000141
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
714
789
+
Thr
GGT
[ENA]
¡û
>W141702126
JMLG01000023
Bacillota
Desulfofundulus thermocisternus DSM 10259 [JMLG]
16679
16754
+
Thr
GGT
[ENA]
¡û
>W1911661980
QFFZ01000046
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
22138
22213
+
Thr
GGT
[ENA]
¡û
>W1911662022
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
1962939
1962864
-
Thr
GGT
[ENA]
¡û
>W1911662082
QFGB01000058
Bacillota
Pelotomaculum sp. FP [QFGB]
26648
26723
+
Thr
GGT
[ENA]
¡û
>W1511564305
LADP01000044
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
9013
9088
+
Thr
GGT
[ENA]
¡û
>W121010885
AGJQ01000009
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
71271
71196
-
Thr
GGT
[ENA]
¡û
>C131002637
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
325766
325841
+
Thr
GGT
[Ensembl]
¡û
>W1610605515
LFSA01000073
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
778
703
-
Thr
GGT
[ENA]
¡û
>W1610614092
LGGS01000045
Bacillota
Pelotomaculum thermopropionicum [LGGS]
380
305
-
Thr
GGT
[ENA]
¡û
>W1710083563
BDJK01000030
Bacillota
Carboxydothermus pertinax [BDJK]
459
384
-
Thr
GGT
[ENA]
¡û
>W1710084320
BDLQ01000016
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
14351
14426
+
Thr
GGT
[ENA]
¡û
>W1710084335
BDLQ01000021
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
17698
17773
+
Thr
GGT
[ENA]
¡û
>W1710084403
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
14342
14417
+
Thr
GGT
[ENA]
¡û
>W1710084437
BDLR01000181
Bacillota
Carboxydocella sp. JDF658 [BDLR]
17590
17665
+
Thr
GGT
[ENA]
¡û
>W1710562376
FOOX01000012
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
146724
146799
+
Thr
GGT
[ENA]
¡û
>W1710574804
FOYM01000018
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
80195
80270
+
Thr
GGT
[ENA]
¡û
>W1710583531
FQUW01000015
Bacillota
Desulfofundulus australicus DSM 11792 [FQUW]
16821
16896
+
Thr
GGT
[ENA]
¡û
>W1710601647
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
98631
98706
+
Thr
GGT
[ENA]
¡û
>W1710601674
FUXM01000045
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
447
522
+
Thr
GGT
[ENA]
¡û
>W1710726802
LFSA01000073
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
778
703
-
Thr
GGT
[ENA]
¡û
>W1710735175
LGGS01000045
Bacillota
Pelotomaculum thermopropionicum [LGGS]
380
305
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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