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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254464 (22 seq.)
>W131218188
ATXL01000107
Bacillota
Bavariicoccus seileri DSM 19936 [ATXL]
302
376
+
Val
TAC
[ENA]
¡û
>C171094263
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
494000
494074
+
Val
TAC
-
¡û
>C171094283
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1746693
1746765
+
Val
TAC
-
¡û
>C171094301
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1748494
1748568
+
Val
TAC
-
¡û
>C171094324
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1130952
1130878
-
Val
TAC
-
¡û
>WENV170971969
MTKX01016631
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
300
374
+
Val
TAC
[ENA]
¢þ
>C191126007
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2866094
2866020
-
Val
TAC
-
¡û
>C191126030
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1273706
1273632
-
Val
TAC
-
¡û
>C191126048
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1271705
1271631
-
Val
TAC
-
¡û
>C191126057
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1203434
1203362
-
Val
TAC
-
¡û
>W1911779601
QXPZ01000015
Bacillota
Atopobacter sp. AH10 [QXPZ]
123392
123320
-
Val
TAC
[ENA]
¡û
>W1911779640
QXPZ01000073
Bacillota
Atopobacter sp. AH10 [QXPZ]
153
79
-
Val
TAC
[ENA]
¡û
>W1810477011
QAOM01000001
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
432
506
+
Val
TAC
[ENA]
¡û
>W1810477034
QAOM01000021
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
54974
54900
-
Val
TAC
[ENA]
¡û
>W1810477042
QAOM01000022
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
41252
41175
-
Val
TAC
[ENA]
¡û
>W1810477055
QAOM01000049
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
262
336
+
Val
TAC
[ENA]
¡û
>W1810477059
QAOM01000049
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
856
930
+
Val
TAC
[ENA]
¡û
>W1510021175
BBYO01000034
Bacillota
Jeotgalibaca dankookensis CL-AS1 [BBYO]
9725
9651
-
Val
TAC
[ENA]
¡û
>W1710560561
FONM01000009
Bacillota
Trichococcus pasteurii [FONM]
328
402
+
Val
TAC
[ENA]
¡û
>W1710584588
FQVR01000005
Bacillota
Trichococcus flocculiformis [FQVR]
183310
183236
-
Val
TAC
[ENA]
¡û
>W1710584601
FQVR01000010
Bacillota
Trichococcus flocculiformis [FQVR]
96404
96330
-
Val
TAC
[ENA]
¡û
>W1710584617
FQVR01000039
Bacillota
Trichococcus flocculiformis [FQVR]
13765
13688
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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