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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254575 (25 seq.)
>W1711129973
LUUM01000289
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
50666
50591
-
Lys
TTT
[ENA]
¡û
>W1711228863
LXWX01000109
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
75064
75139
+
Lys
TTT
[ENA]
¡û
>W131163852
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
1039494
1039419
-
Lys
TTT
[ENA]
¡û
>W08008857
ABLP01000011
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
22784
22859
+
Lys
TTT
[ENA]
¡û
>W141216021
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1736810
1736885
+
Lys
TTT
[ENA]
¡û
>C08001615
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
2021140
2021068
-
Lys
TTT
[Ensembl]
¡û
>WENV170003982
AGTN01524782
[AGTN] bioreactor metagenome; poplar biomass
136
211
+
Lys
TTT
[ENA]
¢þ
>WENV170712673
LNFM01016264
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
168
93
-
Lys
TTT
[ENA]
¢þ
>WENV170973664
MTKY01050449
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1831
1906
+
Lys
TTT
[ENA]
¢þ
>C181089657
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1106987
1106912
-
Lys
TTT
-
¡û
>C191028872
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
2878103
2878178
+
Lys
TTT
-
¡û
>C191152098
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3567263
3567188
-
Lys
TTT
-
¡û
>W141701384
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
39825
39900
+
Lys
TTT
[ENA]
¡û
>W141815725
JQJH01000016
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
68046
67971
-
Lys
TTT
[ENA]
¡û
>W141817304
JQKO01000017
Alphaproteobacteria
Methylocapsa aurea [JQKO]
71246
71321
+
Lys
TTT
[ENA]
¡û
>W141821187
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
86363
86438
+
Lys
TTT
[ENA]
¡û
>C09107922
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
1141556
1141481
-
Lys
TTT
[Ensembl]
¡û
>W1810068807
PDZR01000021
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
71444
71519
+
Lys
TTT
[ENA]
¡û
>W1810330565
PUIV01000014
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
26113
26188
+
Lys
TTT
[ENA]
¡û
>W1810887323
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
595734
595809
+
Lys
TTT
[ENA]
¡û
>W10118814
ADVE01000003
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
126649
126724
+
Lys
TTT
[ENA]
¡û
>W11124986
ADVE01000003
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
126649
126724
+
Lys
TTT
[ENA]
¡û
>W1610941046
LUUM01000289
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
50666
50591
-
Lys
TTT
[ENA]
¡û
>W1611012780
LXWX01000109
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
75064
75139
+
Lys
TTT
[ENA]
¡û
>W1710535153
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
2422699
2422624
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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