This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254605 (84 seq.)
>W1710870068
LMKF01000029
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
16681
16756
+
Leu
TAA
[ENA]
¡û
>W1710875782
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
16199
16272
+
Leu
TAA
[ENA]
¡û
>W1710876519
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
14289
14362
+
Leu
TAA
[ENA]
¡û
>W1710878571
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
14278
14351
+
Leu
TAA
[ENA]
¡û
>W1710909094
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
16551
16624
+
Leu
TAA
[ENA]
¡û
>W1711022924
LRAD01000032
Actinomycetota
Microbacterium laevaniformans [LRAD]
33560
33487
-
Leu
TAA
[ENA]
¡û
>W1711061113
LRYC01000043
Actinomycetota
Microbacterium hominis [LRYC]
8928
8855
-
Leu
TAA
[ENA]
¡û
>W131161943
AQYD01000007
Actinomycetota
Microbacterium sp. 292MF [AQYD]
57258
57185
-
Leu
TAA
[ENA]
¡û
>W1711270763
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
96461
96534
+
Leu
TAA
[ENA]
¡û
>W1711385610
MEEJ01000012
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
142620
142693
+
Leu
TAA
[ENA]
¡û
>W1711385634
MEEK01000015
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
54708
54635
-
Leu
TAA
[ENA]
¡û
>W1711385677
MEEL01000027
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
34953
35026
+
Leu
TAA
[ENA]
¡û
>W1711501613
MKRU01000113
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
61466
61539
+
Leu
TAA
[ENA]
¡û
>W1711503459
MKTQ01000009
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
41532
41459
-
Leu
TAA
[ENA]
¡û
>W1711503511
MKTR01000012
Actinomycetota
Microbacterium sp. 67-17 [MKTR]
10163
10088
-
Leu
TAA
[ENA]
¡û
>WENV011120
AACY020302906
Marine microbial communities from Global Ocean Sampling (GOS)
3058
2983
-
Leu
TAA
[ENA]
>C171065817
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
3285435
3285508
+
Leu
TAA
-
¡û
>C171073370
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
415605
415678
+
Leu
TAA
-
¡û
>WENV180209704
OBAL01014906
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
418
491
+
Leu
TAA
[ENA]
¢þ
>W141223212
BADB01000071
Actinomycetota
Microbacterium sp. B24 [BADB]
3764
3691
-
Leu
TAA
[ENA]
¡û
>W141230005
BASQ01000001
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
121531
121604
+
Leu
TAA
[ENA]
¡û
>WENV019715
AACY020537609
Marine microbial communities from Global Ocean Sampling (GOS)
2718
2643
-
Leu
TAA
[ENA]
>WENV183728371
PJTQ01000030
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
183479
183552
+
Leu
TAA
[ENA]
¢þ
>WENV183737242
PJUD01001777
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5444
5517
+
Leu
TAA
[ENA]
¢þ
>WENV183741038
PJUF01030717
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
538
611
+
Leu
TAA
[ENA]
¢þ
>WENV183741822
PJUG01020773
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
266
339
+
Leu
TAA
[ENA]
¢þ
>WENV170177262
CEOS01233065
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
404
331
-
Leu
TAA
[ENA]
¢þ
>WENV170370767
CETR01135700
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2502
2429
-
Leu
TAA
[ENA]
¢þ
>WENV170398969
CEUD01330046
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
166
93
-
Leu
TAA
[ENA]
¢þ
>WENV170476249
CEVI01090609
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2503
2430
-
Leu
TAA
[ENA]
¢þ
>WENV170763258
LWDU01005400
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2258
2185
-
Leu
TAA
[ENA]
¢þ
>WENV170833525
MDSZ01081586
[MDSZ] marine metagenome; seawater
89815
89890
+
Leu
TAA
[ENA]
¢þ
>WENV170884600
MDTC01186062
[MDTC] marine metagenome; seawater
2590
2517
-
Leu
TAA
[ENA]
¢þ
>WENV170919675
MDTF01011294
[MDTF] marine metagenome; seawater
2596
2523
-
Leu
TAA
[ENA]
¢þ
>WENV170942393
MDTG01377345
[MDTG] marine metagenome; seawater
17168
17241
+
Leu
TAA
[ENA]
¢þ
>C181115681
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
1505224
1505297
+
Leu
TAA
-
¡û
>C191056045
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
1937226
1937153
-
Leu
TAA
-
¡û
>C191073228
CP031015
Actinomycetota
Microbacterium sp. ABRD28 [CP031015]
2503897
2503824
-
Leu
TAA
-
¡û
>C191122368
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
1350307
1350380
+
Leu
TAA
-
¡û
>C191158820
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
2500577
2500503
-
Leu
TAA
-
¡û
>W141739345
JNNT01000063
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
90
163
+
Leu
TAA
[ENA]
¡û
>W1910181918
BJML01000006
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
214653
214580
-
Leu
TAA
[ENA]
¡û
>W1910913697
NHRF01000002
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
396017
395944
-
Leu
TAA
[ENA]
¡û
>W1911140307
NOYP01000028
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
18046
18121
+
Leu
TAA
[ENA]
¡û
>W1911159659
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
121254
121327
+
Leu
TAA
[ENA]
¡û
>W1911535330
OLMV01000001
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
1000250
1000176
-
Leu
TAA
[ENA]
¡û
>W1810234141
PPEE01000006
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
118724
118651
-
Leu
TAA
[ENA]
¡û
>W1810262615
PQSV01000001
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
121736
121809
+
Leu
TAA
[ENA]
¡û
>W1810365479
PVUE01000007
Actinomycetota
Antricoccus suffuscus DSM 100065 [PVUE]
92842
92915
+
Leu
TAA
[ENA]
¡û
>W1810538368
QDFT01000033
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
20443
20370
-
Leu
TAA
[ENA]
¡û
>W1810698905
QMBN01000005
Actinomycetota
Microbacterium sp. SMR1 [QMBN]
120263
120336
+
Leu
TAA
[ENA]
¡û
>W1810722520
QNUV01000041
Actinomycetota
Microbacterium arborescens DSM 20754 [QNUV]
990163
990090
-
Leu
TAA
[ENA]
¡û
>W1810722575
QNUW01000023
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
450421
450348
-
Leu
TAA
[ENA]
¡û
>W1810787049
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
618536
618463
-
Leu
TAA
[ENA]
¡û
>W1810861312
QTTU01000002
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
16441
16516
+
Leu
TAA
[ENA]
¡û
>C11115189
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3258612
3258685
+
Leu
TAA
[Ensembl]
¡û
>W1511398189
JTDK01000006
Actinomycetota
Microbacterium mangrovi MUSC 115 [JTDK]
371134
371059
-
Leu
TAA
[ENA]
¡û
>W1511489501
JWSZ01000001
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
496243
496316
+
Leu
TAA
[ENA]
¡û
>C161043600
CP012697
Actinomycetota
Microbacterium sp. No. 7 [CP012697]
1721860
1721933
+
Leu
TAA
[Ensembl]
¡û
>W121061275
AJGR01000257
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
158503
158576
+
Leu
TAA
[ENA]
¡û
>W1610074004
BCWI01000009
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
127798
127871
+
Leu
TAA
[ENA]
¡û
>W1610590765
LDRR01000051
Actinomycetota
Microbacterium testaceum [LDRR]
32481
32408
-
Leu
TAA
[ENA]
¡û
>W1610590801
LDRS01000057
Actinomycetota
Microbacterium testaceum [LDRS]
32428
32355
-
Leu
TAA
[ENA]
¡û
>W1610590851
LDRT01000082
Actinomycetota
Microbacterium testaceum [LDRT]
19506
19433
-
Leu
TAA
[ENA]
¡û
>W1610590907
LDRU01000101
Actinomycetota
Microbacterium testaceum [LDRU]
33578
33505
-
Leu
TAA
[ENA]
¡û
>W1610590949
LDRV01000101
Actinomycetota
Microbacterium testaceum [LDRV]
33387
33314
-
Leu
TAA
[ENA]
¡û
>W1610732414
LMKF01000029
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
16681
16756
+
Leu
TAA
[ENA]
¡û
>W1610738128
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
16199
16272
+
Leu
TAA
[ENA]
¡û
>W1610738865
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
14289
14362
+
Leu
TAA
[ENA]
¡û
>W1610740917
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
14278
14351
+
Leu
TAA
[ENA]
¡û
>W1610767453
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
16551
16624
+
Leu
TAA
[ENA]
¡û
>W1610871169
LRAD01000032
Actinomycetota
Microbacterium laevaniformans [LRAD]
33560
33487
-
Leu
TAA
[ENA]
¡û
>W1610902090
LRYC01000043
Actinomycetota
Microbacterium hominis [LRYC]
8928
8855
-
Leu
TAA
[ENA]
¡û
>W1611030327
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
96461
96534
+
Leu
TAA
[ENA]
¡û
>W1710071122
BCWI01000009
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
127798
127871
+
Leu
TAA
[ENA]
¡û
>W1710510816
FMYG01000002
Actinomycetota
Microbacterium enclense [FMYG]
16551
16624
+
Leu
TAA
[ENA]
¡û
>W1710525089
FNJG01000002
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
707982
707909
-
Leu
TAA
[ENA]
¡û
>W1710525437
FNJN01000008
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
221369
221294
-
Leu
TAA
[ENA]
¡û
>W1710600060
FTPQ01000002
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
707663
707590
-
Leu
TAA
[ENA]
¡û
>W1710710045
LDRR01000051
Actinomycetota
Microbacterium testaceum [LDRR]
32481
32408
-
Leu
TAA
[ENA]
¡û
>W1710710081
LDRS01000057
Actinomycetota
Microbacterium testaceum [LDRS]
32428
32355
-
Leu
TAA
[ENA]
¡û
>W1710710131
LDRT01000082
Actinomycetota
Microbacterium testaceum [LDRT]
19506
19433
-
Leu
TAA
[ENA]
¡û
>W1710710187
LDRU01000101
Actinomycetota
Microbacterium testaceum [LDRU]
33578
33505
-
Leu
TAA
[ENA]
¡û
>W1710710229
LDRV01000101
Actinomycetota
Microbacterium testaceum [LDRV]
33387
33314
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK